Accession
MI0019047
Description
Oryza sativa
osa-MIR5527 precursor miRNA
Literature search
1 open access papers mention osa-MIR5527
(1 sentences)
(1 sentences)
Sequence
ugaagacaguUCUCAGCCAGGGCAGUAACAGguacccaauucgagugguguaggagcaucugaugaaccaacauccgcaguuuuguuucgccacuguuccuaucaagcucuucgucauguuuaugcguuauccugauccaguacccuccuaaaugacuaucauccuuccugaugucuaucauucucacagccuagcuuucuacucccggaugcgugauucguuggaugacagaaaggcgaucugaaucuaggaugaucccguggaauccuucuuccuuugcuaagaacaggguuaauuuggcgcacugccacugccucagcaacuucuggcacucugaucccugagacaagcucauuggauacaa
...(((.((((((.((.(((((((((..(((((((((..(((((((...(((((((((..((.((((.(((.((.....)).))).)))).)).)))))))))...))))........((....))(((((((((((.(((..........(((((....((((......))))....)))))......((((..((.((...((((((((.....)))))..))).)).))..))))...))).))).)))))))).....((((......))))........)))..))))..)))))....)))))).))).)).)).))))))).......((((((.((((.....))))..)))).)).
...(((.((((((.((.(((((((((..(((((((((..(((((((...(((((((((..((.((((.(((.((.....)).))).)))).)).)))))))))...))))........((....))(((((((((((.(((..........(((((....((((......))))....)))))......((((..((.((...((((((((.....)))))..))).)).))..))))...))).))).)))))))).....((((......))))........)))..))))..)))))....)))))).))).)).)).))))))).......((((((.((((.....))))..)))).)).
Structure
----------------------------------uga c - C C - --AA -- aa ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ggu uc a c c c
aga aguU CU AG CAG GGCAGU CAGgu accc uuc gagu guaggagca ug ugaa caa au c
||| |||| || || ||| |||||| ||||| |||| ||| |||| ||||||||| || |||| ||| || g
ucu ucaa ga uc guc ccguca guuua uggg aag cucg uauccuugu ac gcuu guu ug c
aacauagguuacucgaacagagucccuagucucacgg - c c c a cgcg au ac aaucguuuccuucuuccuaaggugcccuaguaggaucuaagucuagcggaaagacaguagguugcuuagugcguaggcccucaucuuucgauccgacacucuuacuaucuguaguccuuccuacuaucaguaaauccucccaugaccuaguccuauugcguauuuguacugcuu aac -c c u u a
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
Chr11: 9589960-9590324 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR5527
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature osa-miR5527
| Accession | MIMAT0022162 |
| Description | Oryza sativa osa-miR5527 mature miRNA |
| Sequence | 11 - UCUCAGCCAGGGCAGUAACAG - 31 |
| Evidence |
experimental
Illumina [1] |
References
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