Accession
MI0019047
Description
Oryza sativa
osa-MIR5527 precursor miRNA
Literature search
1 open access papers mention osa-MIR5527
(1 sentences)
(1 sentences)
Sequence
1101
reads,
9.0
reads per million, 62 experiments
ugaagacaguUCUCAGCCAGGGCAGUAACAGguacccaauucgagugguguaggagcaucugaugaaccaacauccgcaguuuuguuucgccacuguuccuaucaagcucuucgucauguuuaugcguuauccugauccaguacccuccuaaaugacuaucauccuuccugaugucuaucauucucacagccuagcuuucuacucccggaugcguGAUUCGUUGGAUGACAGAAAGGCGaucugaaucuaggaugaucccguggaauccuucuuccuuugcuaagaacaggguuaauuuggcgcacugccacugccucagcaacuucuggcacucugaucccugagacaagcucauuggauacaa
...(((.((((((.((.(((((((((..(((((((((..(((((((...(((((((((..((.((((.(((.((.....)).))).)))).)).)))))))))...))))........((....))(((((((((((.(((..........(((((....((((......))))....)))))......((((..((.((...((((((((.....)))))..))).)).))..))))...))).))).)))))))).....((((......))))........)))..))))..)))))....)))))).))).)).)).))))))).......((((((.((((.....))))..)))).)).
...(((.((((((.((.(((((((((..(((((((((..(((((((...(((((((((..((.((((.(((.((.....)).))).)))).)).)))))))))...))))........((....))(((((((((((.(((..........(((((....((((......))))....)))))......((((..((.((...((((((((.....)))))..))).)).))..))))...))).))).)))))))).....((((......))))........)))..))))..)))))....)))))).))).)).)).))))))).......((((((.((((.....))))..)))).)).
Structure
----------------------------------uga c - C C - --AA -- aa gagugguguaggagcaucugaugaaccaacauccgcaguuuuguuucgccacuguuccuaucaagcucuucgucauguuuaugc - c uacccuccuaaaugacuaucauccuuccugaugucuaucauucucaca ag u uac -- g
aga aguU CU AG CAG GGCAGU CAGgu accc uuc guuauccu gau cag gccu cu uc ucc cggau c
||| |||| || || ||| |||||| ||||| |||| ||| |||||||| ||| ||| |||| || || ||| ||||| g
ucu ucaa ga uc guc ccguca guuua uggg aag uaguagga cua guc CGGA GA AG AGG GCUUA u
aacauagguuacucgaacagagucccuagucucacgg - c c c a cgcg au ac ---------------------------------------------------------aaucguuuccuucuuccuaaggugccc u a ---------------------------------------------uaG AA C --U UU G
Annotation confidence
High
Do you think this miRNA is real?
Genome context
11: 9589960-9590324 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR5527
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature osa-miR5527-5p
| Accession | MIMAT0022162 |
| Description | Oryza sativa osa-miR5527-5p mature miRNA |
| Sequence | 11 - UCUCAGCCAGGGCAGUAACAG - 31 |
| Evidence |
experimental
Illumina [1] |
Mature osa-miR5527-3p
| Accession | MIMAT0056240 |
| Description | Oryza sativa osa-miR5527-3p mature miRNA |
| Sequence | 216 - GAUUCGUUGGAUGACAGAAAGGCG - 239 |
| Evidence |
experimental
unknown |
References
|
