Stem-loop osa-MIR5527

Accession

MI0019047

Description

Oryza sativa osa-MIR5527 precursor miRNA

Literature search

1 open access papers mention osa-MIR5527
(1 sentences)

Sequence

ugaagacaguUCUCAGCCAGGGCAGUAACAGguacccaauucgagugguguaggagcaucugaugaaccaacauccgcaguuuuguuucgccacuguuccuaucaagcucuucgucauguuuaugcguuauccugauccaguacccuccuaaaugacuaucauccuuccugaugucuaucauucucacagccuagcuuucuacucccggaugcgugauucguuggaugacagaaaggcgaucugaaucuaggaugaucccguggaauccuucuuccuuugcuaagaacaggguuaauuuggcgcacugccacugccucagcaacuucuggcacucugaucccugagacaagcucauuggauacaa
...(((.((((((.((.(((((((((..(((((((((..(((((((...(((((((((..((.((((.(((.((.....)).))).)))).)).)))))))))...))))........((....))(((((((((((.(((..........(((((....((((......))))....)))))......((((..((.((...((((((((.....)))))..))).)).))..))))...))).))).)))))))).....((((......))))........)))..))))..)))))....)))))).))).)).)).))))))).......((((((.((((.....))))..)))).)).

Structure

----------------------------------uga   c    -  C  C   -      --AA     --    aa   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    ggu         uc  a    c   c  c 
                                     aga aguU CU AG CAG GGCAGU    CAGgu  accc  uuc                                                                                                                                                                              gagu   guaggagca  ug ugaa caa au c
                                     ||| |||| || || ||| ||||||    |||||  ||||  |||                                                                                                                                                                              ||||   |||||||||  || |||| ||| || g
                                     ucu ucaa ga uc guc ccguca    guuua  uggg  aag                                                                                                                                                                              cucg   uauccuugu  ac gcuu guu ug c
aacauagguuacucgaacagagucccuagucucacgg   -    c  c  c   a      cgcg     au    ac   aaucguuuccuucuuccuaaggugcccuaguaggaucuaagucuagcggaaagacaguagguugcuuagugcguaggcccucaucuuucgauccgacacucuuacuaucuguaguccuuccuacuaucaguaaauccucccaugaccuaguccuauugcguauuuguacugcuu    aac         -c  c    u   u  a 

Annotation confidence Not enough data

Genome context

Chr11: 9589960-9590324 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR5527

Mature osa-miR5527

• Accession: MIMAT0022162
• Description: Oryza sativa osa-miR5527 mature miRNA
• Sequence: 11 - UCUCAGCCAGGGCAGUAACAG - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53