Stem-loop osa-MIR5528

Accession

MI0019048

Description

Oryza sativa osa-MIR5528 precursor miRNA

Literature search

2 open access papers mention osa-MIR5528
(2 sentences)

Sequence

329 reads, 5.0 reads per million, 33 experiments

GACAUCAGUUUGCAGUAUCUUUaccaaggucugguacugcccAAGACGGUUUUAGAUGUUGCCuccugaucgu
.(((((((...(((((((((..(((...((((((......)).)))))))...)))))))))...))))).))

Structure

G  -     UUU         -UU   aag    -  ua 
 AC AUCAG   GCAGUAUCU   acc   gucu gg  c
 || |||||   |||||||||   |||   |||| ||   
 ug uaguc   CGUUGUAGA   UGG   CAGA cc  u
-  c     cuC         UUU   ---    A  cg 

Annotation confidence Medium

Genome context

11: 9586987-9587059 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR5528

Mature osa-miR5528-5p

• Accession: MIMAT0056241
• Description: Oryza sativa osa-miR5528-5p mature miRNA
• Sequence: 1 - GACAUCAGUUUGCAGUAUCUUU - 22
• Evidence: experimental ; unknown

Mature osa-miR5528-3p

• Accession: MIMAT0022163
• Description: Oryza sativa osa-miR5528-3p mature miRNA
• Sequence: 43 - AAGACGGUUUUAGAUGUUGCC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53