Stem-loop osa-MIR5528

Accession

MI0019048

Description

Oryza sativa osa-MIR5528 precursor miRNA

Literature search

2 open access papers mention osa-MIR5528
(2 sentences)

Sequence

gacaucaguuugcaguaucuuuaccaaggucugguacugcccAAGACGGUUUUAGAUGUUGCCuccugaucgu
.(((((((...(((((((((..(((...((((((......)).)))))))...)))))))))...))))).))

Structure

g  -     uuu         -uu   aag    -  ua 
 ac aucag   gcaguaucu   acc   gucu gg  c
 || |||||   |||||||||   |||   |||| ||   
 ug uaguc   CGUUGUAGA   UGG   CAGA cc  u
-  c     cuC         UUU   ---    A  cg 

Annotation confidence Not enough data

Genome context

Chr11: 9586987-9587059 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR5528

Mature osa-miR5528

• Accession: MIMAT0022163
• Description: Oryza sativa osa-miR5528 mature miRNA
• Sequence: 43 - AAGACGGUUUUAGAUGUUGCC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53