Stem-loop osa-MIR5529

Accession

MI0019049

Description

Oryza sativa osa-MIR5529 precursor miRNA

Sequence

2375 reads, 16.0 reads per million, 118 experiments

auaugugugagcgugguguugcgugugauguuuguagugaaauugaaaaaaaaaaguagguuuaguaugcauaaauaaauguucucauuauuuGUGUGGAUGAUUUAGAAAcggacgaacuaauuacauaccgggguaagaucgauugaaauuccauuagagcgcaaugaauccccgagacaauugaauuacaccaaugaucgcccaaaaaaauaaagaguacaaagucaugucaccgaggcuaaauucgccucacuacuuguguggauguacaaaagagaccauuaauuucaaucuacaGUUUCAUCCAUGGACACCGCAuuguccauug
....(((.((..((((((((.((((.((((.(((((((((((((((............(((((....(((((.......(((.(((.((((((...(((.(((((..........................(((((.....((.((((...((......))...))))))..))))).....((((........))))))))).)))...)))))).))).))).............(((((.......))))).((((....)))))))))......))))).)))))))))..))))))...))))))))))))))))....)))))..

Structure

auau   u  --gc        g    u    --u      --         aaaaaaaaagua     --agua     ------------------------------------aaauaaa   u   a      GUG   A     UAGAAAcggacgaacuaauuacauac     uaaga  g    aaa  cc 
    gug ga    gugguguu cgug gaug   uuguag  ugaaauuga            gguuu      ugcau                                           ugu cuc uuauuu   UGG UGAUU                          cgggg     uc auug   uu  a
    ||| ||    |||||||| |||| ||||   ||||||  |||||||||            |||||      |||||                                           ||| ||| ||||||   ||| |||||                          |||||     || ||||   ||   
    uac cu    CGCCACAG GUAC CUAC   Gacauc  acuuuaauu            ccaga      augua                                           aca gag aauaaa   acc gcuag                          gcccc     ag uaac   ag  u
--gu   -  guuA        -    -    UUU      ua         -----------a     gaaaac     gguguguucaucacuccgcuuaaaucggagccacuguacugaa   u   a      aaa   c     -----uaaccacauuaaguuaacaga     ---ua  -    gcg  au 

Annotation confidence Low

Genome context

11: 24804927-24805257 [-]

Mature osa-miR5529-5p

• Accession: MIMAT0056242
• Description: Oryza sativa osa-miR5529-5p mature miRNA
• Sequence: 94 - GUGUGGAUGAUUUAGAAA - 111
• Evidence: experimental ; unknown

Mature osa-miR5529-3p

• Accession: MIMAT0022164
• Description: Oryza sativa osa-miR5529-3p mature miRNA
• Sequence: 301 - GUUUCAUCCAUGGACACCGCA - 321
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53