Stem-loop osa-MIR5530

Accession

MI0019050

Description

Oryza sativa osa-MIR5530 precursor miRNA

Literature search

1 open access papers mention osa-MIR5530
(1 sentences)

Sequence

1729 reads, 24.0 reads per million, 36 experiments

acuguuggcgAGUGGUGUCGUAUUACCUGCCcuuauaggacaugaugcaucaugcaugcauuauggcugggagCAUGAUAUGAUACCUCUAGUAUGuaaacuaauaauuaguagcagg
.(((((.((.((.((((((((((((..((((((....((.((((((((((.....)))))))))).))))).))))))))))))))).)).))......(((((...)))))))))).

Structure

a     ------------------g  g  U            CC   -   uaua  a          c 
 cuguu                   gc AG GGUGUCGUAUUA  UGC Ccu    gg caugaugcau a
 |||||                   || || ||||||||||||  ||| |||    || |||||||||| u
 gacga                   UG UC CCAUAGUAUAGU  ACg ggg    uc guauuacgua g
g     ugauuaauaaucaaauGUA  A  U            --   a   ----  g          c 

Annotation confidence Medium

Genome context

12: 21782328-21782445 [+]

Mature osa-miR5530-5p

• Accession: MIMAT0022165
• Description: Oryza sativa osa-miR5530-5p mature miRNA
• Sequence: 11 - AGUGGUGUCGUAUUACCUGCC - 31
• Evidence: experimental ; Illumina [1]

Mature osa-miR5530-3p

• Accession: MIMAT0056243
• Description: Oryza sativa osa-miR5530-3p mature miRNA
• Sequence: 74 - CAUGAUAUGAUACCUCUAGUAUG - 96
• Evidence: experimental ; unknown

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53