Stem-loop osa-MIR5532

Accession

MI0019052

Description

Oryza sativa osa-MIR5532 precursor miRNA

Sequence

10917 reads, 36.0 reads per million, 140 experiments

ccucuuuuggauucuuaagaccacccuuguaguAGGAUACCGUCUGCUUUGGGUucuuuauuauauuaucuccuucgagggauuuuuaggaucguuuaggcuauauuuagucuauuuuggcuAUGGAAUAUAUGACAAAGGUGGagucuuggag
((......))..(((.(((((((((.((((.(((..((.((((..(((...((((((..........(((((......)))))....))))))...(((((((....)))))))....))).)))).)).))).)))).)))))..))))))).

Structure

ccucuuuuggau   u    --     c    a   GG  A    CU   ----------------------UUG      uuauuauauu     cu 
            ucu aaga  ccacc uugu guA  AU CCGU  GCU                         GGUucu          aucuc  u
            ||| ||||  ||||| |||| |||  || ||||  |||                         ||||||          |||||   
            agg uucu  GGUGG AACA UAU  UA GGUA  cgg                         cuagga          uaggg  c
-----------g   -    ga     A    G   -A  A    -u   uuuuaucugauuuauaucggauuug      ------uuuu     ag 

Annotation confidence Low

Genome context

4: 23647854-23648007 [+]

Mature osa-miR5532-5p

• Accession: MIMAT0056244
• Description: Oryza sativa osa-miR5532-5p mature miRNA
• Sequence: 34 - AGGAUACCGUCUGCUUUGGGU - 54
• Evidence: experimental ; unknown

Mature osa-miR5532-3p

• Accession: MIMAT0022167
• Description: Oryza sativa osa-miR5532-3p mature miRNA
• Sequence: 123 - AUGGAAUAUAUGACAAAGGUGG - 144
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53