miRBase entry: osa-MIR5533

Stem-loop osa-MIR5533


Accession
MI0019053
Description
Oryza sativa osa-MIR5533 precursor miRNA


Sequence

3205 reads, 19.0 reads per million, 72 experiments
cucccugacuccuCUUUGCCAGAAGCCCUCAUGGcagcuguugagagaggugcucaugcaccucagauggggauacgccaagcauccuuauuuuauagcugccauagcaauucccugauaaggaugcuuggcguauccccaucugcuggcagcuauaaaauuuauagcugccauagcaauucccugauaaggaugcuuggcguauccccaucugaggugcaugagcaccucucucaacaguugcCAUGAAGGCUUCUGGCAAAGAggagucaggga
.((((((((((((((((((((((((((.((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.......(((((.((((..(((.......))))))))))))..........(((((((((((((((...)))))))))))..)))).......)))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).))))))))))))))))))))))))))

Structure
c                          C                                                                uuauagcugccauagcaauucccugauaaggaugcuuggcguauccccauc    --           a 
 ucccugacuccuCUUUGCCAGAAGCC UCAUGGcagcuguugagagaggugcucaugcaccucagauggggauacgccaagcauccuuauu                                                   ugcu  ggcagcuauaa  
 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                                                   ||||  ||||||||||| a
 agggacugaggAGAAACGGUCUUCGG AGUACcguugacaacucucuccacgaguacguggagucuaccccuaugcgguucguaggaauag                                                   acga  ccgucgauauu  
-                          A                                                                --------------------------------------------ucccuua    ua           u 


Annotation confidence Medium
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Genome context
4: 2761607-2761882 [-]

Database links

Mature osa-miR5533-5p

Accession MIMAT0022168
Description Oryza sativa osa-miR5533-5p mature miRNA
Sequence 14 - CUUUGCCAGAAGCCCUCAUGG - 34
Evidence experimental
Illumina [1]

Mature osa-miR5533-3p

Accession MIMAT0056245
Description Oryza sativa osa-miR5533-3p mature miRNA
Sequence 245 - CAUGAAGGCUUCUGGCAAAGA - 265
Evidence experimental
unknown

References

  1. PubMed ID: 21679406
    Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
    Wei LQ, Yan LF, Wang T
    Genome Biol (2011) 12:R53