Stem-loop osa-MIR5533

Accession

MI0019053

Description

Oryza sativa osa-MIR5533 precursor miRNA

Sequence

cucccugacuccuCUUUGCCAGAAGCCCUCAUGGcagcuguugagagaggugcucaugcaccucagauggggauacgccaagcauccuuauuuuauagcugccauagcaauucccugauaaggaugcuuggcguauccccaucugcuggcagcuauaaaauuuauagcugccauagcaauucccugauaaggaugcuuggcguauccccaucugaggugcaugagcaccucucucaacaguugccaugaaggcuucuggcaaagaggagucaggga
.((((((((((((((((((((((((((.((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.......(((((.((((..(((.......))))))))))))..........(((((((((((((((...)))))))))))..)))).......)))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).))))))))))))))))))))))))))

Structure

c                          C                                                                uuauagcugccauagcaauucccugauaaggaugcuuggcguauccccauc    --           a 
 ucccugacuccuCUUUGCCAGAAGCC UCAUGGcagcuguugagagaggugcucaugcaccucagauggggauacgccaagcauccuuauu                                                   ugcu  ggcagcuauaa  
 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                                                   ||||  ||||||||||| a
 agggacugaggagaaacggucuucgg aguaccguugacaacucucuccacgaguacguggagucuaccccuaugcgguucguaggaauag                                                   acga  ccgucgauauu  
-                          a                                                                --------------------------------------------ucccuua    ua           u 

Annotation confidence Not enough data

Genome context

Chr4: 2761607-2761882 [-]

Mature osa-miR5533

• Accession: MIMAT0022168
• Description: Oryza sativa osa-miR5533 mature miRNA
• Sequence: 14 - CUUUGCCAGAAGCCCUCAUGG - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53