Stem-loop osa-MIR5534a

Accession

MI0019054

Description

Oryza sativa osa-MIR5534a precursor miRNA

Sequence

7474 reads, 25.0 reads per million, 131 experiments

aacuuuagcgccuUGACGACAACAGCUAGAAUGGucgcggcgacgaaggauugucccccgaugaggccgccAUUCUAGCUGUUGUCGUCGAGGCGcuaaagu
.((((((((((((((((((((((((((((((((((.((..((.((..(((...)))..)).))..)).))))))))))))))))))))))))))))))))))

Structure

a                                  c  gg  a  aa   u 
 acuuuagcgccuUGACGACAACAGCUAGAAUGGu gc  cg cg  gga  
 |||||||||||||||||||||||||||||||||| ||  || ||  ||| u
 ugaaaucGCGGAGCUGCUGUUGUCGAUCUUAccg cg  gu gc  ccu  
-                                  c  ga  a  cc   g 

Annotation confidence Low

Genome context

11: 6404295-6404396 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR5534a

Mature osa-miR5534a-5p

• Accession: MIMAT0022169
• Description: Oryza sativa osa-miR5534a-5p mature miRNA
• Sequence: 14 - UGACGACAACAGCUAGAAUGG - 34
• Evidence: experimental ; Illumina [1]

Mature osa-miR5534a-3p

• Accession: MIMAT0056246
• Description: Oryza sativa osa-miR5534a-3p mature miRNA
• Sequence: 72 - AUUCUAGCUGUUGUCGUCGAGGCG - 95
• Evidence: experimental ; unknown

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53