Accession
MI0019056
Description
Oryza sativa
osa-MIR5535 precursor miRNA
Sequence
6577
reads,
60.0
reads per million, 115 experiments
cccgaacucgUCUGCGUGAUUGAAGUCUGCAUcccccaugagaggaauagugucuuuggugcugccaugccaauccgaucuauucccuuucuuuuuuuuuguuuuuguuuuuucauguuugcaugaucggugaucaggccuuuuuuccccacgcuguucagauucauggugguuuuucuugucgauucaaucuucuaugcuuuaugguugcaauuuucccagguuuuaguuuaguguuuauaacuagacaugaaaagacaagauauguauuuuuuucgcagggguagagugAGAAUCCGGAUGCAGCAUCAAUGCagaugaggauuau
......(((((((((((...(((.(.((((((((.....(((((((((((.(((.(((((........)))))...)))))))).))))))...........(((((((((((((((((.((.(((((...))))).)).........((((..((........))..)))).....((((..(((((((((.............))))).))))....))))........((((.......))))))))))))))))))))).........(((((((.........)))))))...))))))))).))))))))))))))......
......(((((((((((...(((.(.((((((((.....(((((((((((.(((.(((((........)))))...)))))))).))))))...........(((((((((((((((((.((.(((((...))))).)).........((((..((........))..)))).....((((..(((((((((.............))))).))))....))))........((((.......))))))))))))))))))))).........(((((((.........)))))))...))))))))).))))))))))))))......
Structure
cccgaa GAU A U cccaugagaggaauagugucuuuggugcugccaugccaauccgaucuauucccuuucuuuuuuuuuguuuuuguuuuuucauguuugcaugaucggugaucaggccuuuuuuccccacgcuguucagauucauggugguuuuucuugucgauucaaucuucuaugcuuuaugguugcaauuuucccagguuuuaguuuaguguuuauaacuagacaugaaaagacaagauauguauuu agg
cucgUCUGCGU UGA G CUGCAUcc uuuucgc g
||||||||||| ||| | |||||||| ||||||| g
gaguagaCGUA ACU C GACGUAGG AAGAgug u
uauuag --- A - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCU aga
Annotation confidence
Low
Do you think this miRNA is real?
Genome context
12: 12445975-12446302 [-]
Database links
Mature osa-miR5535-5p
| Accession | MIMAT0022171 |
| Description | Oryza sativa osa-miR5535-5p mature miRNA |
| Sequence | 11 - UCUGCGUGAUUGAAGUCUGCAU - 32 |
| Evidence |
experimental
Illumina [1] |
| Database links |
|
Mature osa-miR5535-3p
| Accession | MIMAT0056248 |
| Description | Oryza sativa osa-miR5535-3p mature miRNA |
| Sequence | 292 - AGAAUCCGGAUGCAGCAUCAAUGC - 315 |
| Evidence |
experimental
unknown |
References
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