Accession
MI0019056
Description
Oryza sativa
osa-MIR5535 precursor miRNA
Sequence
2
reads,
3
reads per million, 1 experiments
cccgaacucgUCUGCGUGAUUGAAGUCUGCAUcccccaugagaggaauagugucuuuggugcugccaugccaauccgaucuauucccuuucuuuuuuuuuguuuuuguuuuuucauguuugcaugaucggugaucaggccuuuuuuccccacgcuguucagauucauggugguuuuucuugucgauucaaucuucuaugcuuuaugguugcaauuuucccagguuuuaguuuaguguuuauaacuagacaugaaaagacaagauauguauuuuuuucgcagggguagagugagaauccggaugcagcaucaaugcagaugaggauuau
......(((((((((((...(((.(.((((((((.....(((((((((((.(((.(((((........)))))...)))))))).))))))...........(((((((((((((((((.((.(((((...))))).)).........((((..((........))..)))).....((((..(((((((((.............))))).))))....))))........((((.......))))))))))))))))))))).........(((((((.........)))))))...))))))))).))))))))))))))......
......(((((((((((...(((.(.((((((((.....(((((((((((.(((.(((((........)))))...)))))))).))))))...........(((((((((((((((((.((.(((((...))))).)).........((((..((........))..)))).....((((..(((((((((.............))))).))))....))))........((((.......))))))))))))))))))))).........(((((((.........)))))))...))))))))).))))))))))))))......
Structure
cccgaa GAU A U ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cccau - u --u gcu
cucgUCUGCGU UGA G CUGCAUcc gagagg aauag guc uuggu g
||||||||||| ||| | |||||||| |||||| ||||| ||| |||||
gaguagacgua acu c gacguagg cuuucc uuauc uag aaccg c
uauuag --- a - ccuaagagugagauggggacgcuuuuuuuauguauagaacagaaaaguacagaucaauauuugugauuugauuuuggacccuuuuaacguugguauuucguaucuucuaacuuagcuguucuuuuuggugguacuuagacuugucgcaccccuuuuuuccggacuaguggcuaguacguuuguacuuuuuuguuuuuguuuuuuuuu c - ccu uac
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
Chr12: 12445975-12446302 [-]
Database links
Mature osa-miR5535
| Accession | MIMAT0022171 |
| Description | Oryza sativa osa-miR5535 mature miRNA |
| Sequence | 11 - UCUGCGUGAUUGAAGUCUGCAU - 32 |
| Evidence |
experimental
Illumina [1] |
| Database links |
|
References
|
