Stem-loop osa-MIR5536

Accession

MI0019057

Description

Oryza sativa osa-MIR5536 precursor miRNA

Sequence

22968 reads, 79.0 reads per million, 139 experiments

ugaggauccucuaacauaauaucauuaucauuacAGUUACUGGUAUGUAGAUCUCACCcuccuauugccccacauaucauugucuauauuuuuuuuaggaaugucaguaccuauAAUGGUAGUGACAUUAUGGUAGaggaugugaa
.....((((((((.((((((.((((((((((((.((.(((((((((.............(((((...............................)))))))))))))).)).)))))))))))).)))))).)))))))).....

Structure

ugagg        a      a            c  U         GUAGAUCUCACCc     uugccccacauauc 
     auccucua cauaau ucauuaucauua AG UACUGGUAU             uccua              a
     |||||||| |||||| |||||||||||| || |||||||||             |||||              u
     uaggaGAU GUAUUA AGUGAUGGUAAu uc augacugua             aggau              u
aagug        G      C            a  c         -------------     uuuuuuuauaucug 

Annotation confidence Low

Genome context

9: 9140162-9140307 [-]

Mature osa-miR5536-5p

• Accession: MIMAT0056249
• Description: Oryza sativa osa-miR5536-5p mature miRNA
• Sequence: 35 - AGUUACUGGUAUGUAGAUCUCACC - 58
• Evidence: experimental ; unknown

Mature osa-miR5536-3p

• Accession: MIMAT0022172
• Description: Oryza sativa osa-miR5536-3p mature miRNA
• Sequence: 115 - AAUGGUAGUGACAUUAUGGUAG - 136
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53