Stem-loop osa-MIR5537

Accession

MI0019058

Description

Oryza sativa osa-MIR5537 precursor miRNA

Sequence

1794 reads, 9.0 reads per million, 100 experiments

uuguuuuauuaauugACUAGAAAAAUGUCCGUGCauuacaacgggugaaaaauuucuaaugauaauauauauuuuucaugcauaaccaugucaauggcAAUGUUUGUAUGGAUCGUUUGUagcuaaaaca
.(((((((......(.(((.(((...(((((((((..(((..(.(((((((((.................))))))))).)....((((....))))...))).)))))))))..))).)))))))))))

Structure

u       uuaauu A   G   AAU         uu   -----------------ac g         uucuaau 
 uguuuua      g CUA AAA   GUCCGUGCa  aca                   g gugaaaaau       g
 |||||||      | ||| |||   |||||||||  |||                   | |||||||||       a
 acaaaau      c gaU UUU   UAGGUAUGU  UGU                   c uacuuuuua       u
-       ------ -   G   -GC         -U   AAcgguaacuguaccaaua g         uauauaa 

Annotation confidence Low

Genome context

10: 11112663-11112792 [+]

Mature osa-miR5537-5p

• Accession: MIMAT0056250
• Description: Oryza sativa osa-miR5537-5p mature miRNA
• Sequence: 16 - ACUAGAAAAAUGUCCGUGC - 34
• Evidence: experimental ; unknown

Mature osa-miR5537-3p

• Accession: MIMAT0022173
• Description: Oryza sativa osa-miR5537-3p mature miRNA
• Sequence: 99 - AAUGUUUGUAUGGAUCGUUUGU - 120
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53