Stem-loop osa-MIR5538

Accession

MI0019059

Description

Oryza sativa osa-MIR5538 precursor miRNA

Literature search

1 open access papers mention osa-MIR5538
(1 sentences)

Sequence

3 reads, 2 reads per million, 2 experiments

augaggaacuACUGAACUCAAUCACUUGCUGCcguuacucaacaguuuucuguugaggucuaucccguagagguagucaaauuagaacgggaggagaggaggugaguagggguaguucaaugg
.....((((((((..(((((.((.(((.((.(((((.((((((((....))))))))(.(((((.......))))).).......))))).))..)))))..)))))...)))))))).....

Structure

augag        -GA     -A  A   -G  G     ---------------------------a        u 
     gaacuACU   ACUCA  UC CUU  CU Ccguu                            cucaacag u
     ||||||||   |||||  || |||  || |||||                            ||||||||  
     cuugaugg   ugagu  ag gag  ga ggcaa                            gaguuguc u
gguaa        gga     gg  -   ag  g     gauuaaacugauggagaugcccuaucug        u 

Annotation confidence Not enough data

Genome context

Chr10: 21337283-21337405 [+]

Mature osa-miR5538

• Accession: MIMAT0022174
• Description: Oryza sativa osa-miR5538 mature miRNA
• Sequence: 11 - ACUGAACUCAAUCACUUGCUGC - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53