Stem-loop osa-MIR5538

Accession

MI0019059

Description

Oryza sativa osa-MIR5538 precursor miRNA

Literature search

1 open access papers mention osa-MIR5538
(1 sentences)

Sequence

13959 reads, 53.0 reads per million, 141 experiments

augaggaacuACUGAACUCAAUCACUUGCUGCcguuacucaacaguuuucuguugaggucuaucccguagagguagucaaauuAGAACGGGAGGAGAGGAGGUGaguagggguaguucaaugg
.....((((((((..(((((.((.(((.((.(((((.((((((((....))))))))(.(((((.......))))).).......))))).))..)))))..)))))...)))))))).....

Structure

augag        -GA     -A  A   -G  G     ---------------------------a        u 
     gaacuACU   ACUCA  UC CUU  CU Ccguu                            cucaacag u
     ||||||||   |||||  || |||  || |||||                            ||||||||  
     cuugaugg   ugaGU  AG GAG  GA GGCAA                            gaguuguc u
gguaa        gga     GG  -   AG  G     GAuuaaacugauggagaugcccuaucug        u 

Annotation confidence Low

Genome context

10: 21337283-21337405 [+]

Mature osa-miR5538-5p

• Accession: MIMAT0022174
• Description: Oryza sativa osa-miR5538-5p mature miRNA
• Sequence: 11 - ACUGAACUCAAUCACUUGCUGC - 32
• Evidence: experimental ; Illumina [1]

Mature osa-miR5538-3p

• Accession: MIMAT0056251
• Description: Oryza sativa osa-miR5538-3p mature miRNA
• Sequence: 84 - AGAACGGGAGGAGAGGAGGUG - 104
• Evidence: experimental ; unknown

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53