Stem-loop osa-MIR5539a

Accession

MI0019060

Description

Oryza sativa osa-MIR5539a precursor miRNA

Sequence

8322 reads, 41.0 reads per million, 139 experiments

gauucaaagcAAGAAAACGGAUGCGCGUGCUAacgcuuucgcgcuagugcgcucAAUCCGUUGCUUGUUUGGaaca
..(((.(((((((..((((((((.((((((((.(((....))).)))))))).).))))))).))))))).)))..

Structure

ga   a       AA       - C        a   u 
  uuc aagcAAG  AACGGAU G GCGUGCUA cgc u
  ||| |||||||  ||||||| | |||||||| |||  
  aaG UUUGUUC  UUGCCUA c cgcgugau gcg u
ac   G       -G       A u        c   c 

Annotation confidence Low

Genome context

Mt: 46287-46362 [+]

Mature osa-miR5539a-5p

• Accession: MIMAT0022175
• Description: Oryza sativa osa-miR5539a-5p mature miRNA
• Sequence: 11 - AAGAAAACGGAUGCGCGUGCUA - 32
• Evidence: experimental ; Illumina [1]

Mature osa-miR5539a-3p

• Accession: MIMAT0056252
• Description: Oryza sativa osa-miR5539a-3p mature miRNA
• Sequence: 55 - AAUCCGUUGCUUGUUUGG - 72
• Evidence: experimental ; unknown

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53