Stem-loop osa-MIR5541

Accession

MI0019062

Description

Oryza sativa osa-MIR5541 precursor miRNA

Sequence

guccaaugagUCAAGUGGUGUACUCUAAAGAaaaaaaaucuaauuaauuuaaccaccuaaaauagcuuuuccuuuuccuuuuugggauuuaucacccuaaacuacaauacauaaaucccaaaaaggaaaaaaacuauuuuacguggguauauuagacuuuuuucuuuagaguacaccacuuaacucauuggacu
(((((((((((.((((((((((((((((((((((((..((((((........((((.((((((((.((((...(((((((((((((((((((..................))))))))))))))))))))))))))))))).))))....)))))).)))))))))))))))))))))))).))))))))))).

Structure

-           C                        aa      uaauuuaa    c        c    ccu                   cacccuaa 
 guccaaugagU AAGUGGUGUACUCUAAAGAaaaaa  ucuaau        ccac uaaaauag uuuu   uuuccuuuuugggauuuau        a
 ||||||||||| ||||||||||||||||||||||||  ||||||        |||| |||||||| ||||   |||||||||||||||||||         
 cagguuacuca uucaccacaugagauuucuuuuuu  agauua        ggug auuuuauc aaaa   aaaggaaaaacccuaaaua        c
u           a                        -c      ----uaug    c        -    ---                   cauaacau 

Annotation confidence Not enough data

Genome context

Chr2: 10238953-10239146 [-]

Mature osa-miR5541

• Accession: MIMAT0022177
• Description: Oryza sativa osa-miR5541 mature miRNA
• Sequence: 11 - UCAAGUGGUGUACUCUAAAGA - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53