Stem-loop osa-MIR5541

Accession

MI0019062

Description

Oryza sativa osa-MIR5541 precursor miRNA

Sequence

1242 reads, 8.0 reads per million, 78 experiments

guccaaugagUCAAGUGGUGUACUCUAAAGAaaaaaaaucuaauuaauuuaaccaccuaaaauagcuuuuccuuuuccuuuuugggauuuaucacccuaaacuacaauacauaaaucccaaaaaggaaaaaaacuAUUUUACGUGGGUAUAUUAGACUUuuuucuuuagaguacaccacuuaacucauuggacu
(((((((((((.((((((((((((((((((((((((..((((((........((((.((((((((.((((...(((((((((((((((((((..................))))))))))))))))))))))))))))))).))))....)))))).)))))))))))))))))))))))).))))))))))).

Structure

-           C                        aa      uaauuuaa    c        c    ccu                   cacccuaa 
 guccaaugagU AAGUGGUGUACUCUAAAGAaaaaa  ucuaau        ccac uaaaauag uuuu   uuuccuuuuugggauuuau        a
 ||||||||||| ||||||||||||||||||||||||  ||||||        |||| |||||||| ||||   |||||||||||||||||||         
 cagguuacuca uucaccacaugagauuucuuuuUU  AGAUUA        GGUG AUUUUAuc aaaa   aaaggaaaaacccuaaaua        c
u           a                        -C      ----UAUG    C        -    ---                   cauaacau 

Annotation confidence Low

Genome context

2: 10238953-10239146 [-]

Mature osa-miR5541-5p

• Accession: MIMAT0022177
• Description: Oryza sativa osa-miR5541-5p mature miRNA
• Sequence: 11 - UCAAGUGGUGUACUCUAAAGA - 31
• Evidence: experimental ; Illumina [1]

Mature osa-miR5541-3p

• Accession: MIMAT0056254
• Description: Oryza sativa osa-miR5541-3p mature miRNA
• Sequence: 136 - AUUUUACGUGGGUAUAUUAGACUU - 159
• Evidence: experimental ; unknown

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53