Stem-loop osa-MIR5543

Accession

MI0019064

Description

Oryza sativa osa-MIR5543 precursor miRNA

Sequence

705 reads, 6.0 reads per million, 68 experiments

auugaaaucaUAUGAAUGGUAUAUUUUCUUGcaacauguguaauuaauaccaaagcaccuacacauguuacaAGAAAAUAUACGGUUUAUAUGAUUucaguu
(((((((((((((((((.(((((((((((((.((((((((((.................)))))))))).))))))))))))).))))))))))))))))).

Structure

-                 G             c          auuaaua 
 auugaaaucaUAUGAAU GUAUAUUUUCUUG aacaugugua       c
 ||||||||||||||||| ||||||||||||| ||||||||||       c
 ugacuUUAGUAUAUUUG CAUAUAAAAGAac uuguacacau       a
u                 G             a          ccacgaa 

Annotation confidence Low

Genome context

4: 16417248-16417349 [-]

Mature osa-miR5543-5p

• Accession: MIMAT0022179
• Description: Oryza sativa osa-miR5543-5p mature miRNA
• Sequence: 11 - UAUGAAUGGUAUAUUUUCUUG - 31
• Evidence: experimental ; Illumina [1]

Mature osa-miR5543-3p

• Accession: MIMAT0056256
• Description: Oryza sativa osa-miR5543-3p mature miRNA
• Sequence: 73 - AGAAAAUAUACGGUUUAUAUGAUU - 96
• Evidence: experimental ; unknown

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53