Stem-loop osa-MIR5544

Accession

MI0019065

Description

Oryza sativa osa-MIR5544 precursor miRNA

Sequence

uuguugugacaccauuuccauuuaguuuuucauacaccauuaauuuucuuacuaacaaaaucuuaccaugcuauagauuucagccucuuauucucauauucuuguucuaauuaugcaccuugugaauccauagguuguucuuguuguucgauacuuggagcaucguuuggaguAGAACACGGAGUAGAAGUUGGUgucaaugcag
.(((..((((((((((((...(((((........................)))))..((((((...........))))))((((((.......(((((....(((.........)))...)))))......))))))..(((..(((((..(((((.((((...)))).))))))))))..)))..)))).))))))))..))).

Structure

u   ug        -    cauuuaguuuuucauacaccauuaauuuucuuacuaacaaaaucuuaccaugcuauagauuucagccucuuauucucauauucuuguucuaauuaugcaccuugugaauccauagguuguu   gu     ga     g    a 
 ugu  ugacacca uuuc                                                                                                                         cuu  uguuc  uacuu gagc  
 |||  |||||||| ||||                                                                                                                         |||  |||||  ||||| |||| u
 acg  acugUGGU GAAG                                                                                                                         GAG  ACAAG  Augag uuug  
g   ua        U    -----------------------------------------------------------------------------------------------------------------------AU   GC     --     g    c 

Annotation confidence Not enough data

Genome context

Chr2: 19334838-19335042 [+]

Mature osa-miR5544

• Accession: MIMAT0022180
• Description: Oryza sativa osa-miR5544 mature miRNA
• Sequence: 174 - AGAACACGGAGUAGAAGUUGGU - 195
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53