Stem-loop cel-mir-5545

Accession

MI0019066

Description

Caenorhabditis elegans cel-mir-5545 precursor miRNA

Sequence

222 reads, 13 reads per million, 12 experiments

ggugaggggugugucccauGCCGGUUUGAUCUACAAAAAAUGCgggagcauagaaaaaucccgcACUUUUGUAGAUCAAACCGACAUgggacaaccugacacuguguuca
((((..((((.(((((((((.(((((((((((((((((..(((((((...........))))))).))))))))))))))))).)))))))))))))..)))).......

Structure

-------    ag    g         C                 AA       gcau 
       ggug  gggu ugucccauG CGGUUUGAUCUACAAAA  UGCggga    a
       ||||  |||| ||||||||| |||||||||||||||||  |||||||    g
       ucac  ucca acagggUAC GCCAAACUAGAUGUUUU  Acgcccu    a
acuugug    ag    -         A                 -C       aaaa 

Annotation confidence Not enough data

Genome context

chrI: 11885596-11885705 [+]

Mature cel-miR-5545-5p

• Accession: MIMAT0022181
• Description: Caenorhabditis elegans cel-miR-5545-5p mature miRNA
• Sequence: 20 - GCCGGUUUGAUCUACAAAAAAUGC - 43
• Evidence: experimental ; Illumina [1]

Mature cel-miR-5545-3p

• Accession: MIMAT0022182
• Description: Caenorhabditis elegans cel-miR-5545-3p mature miRNA
• Sequence: 65 - ACUUUUGUAGAUCAAACCGACAU - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21810936
   Age-associated changes in expression of small, noncoding RNAs, including microRNAs, in C. elegans
   "Kato M, Chen X, Inukai S, Zhao H, Slack FJ"
   "RNA (2011) 17:1804-1820