Stem-loop cel-mir-5548

Accession

MI0019069

Description

Caenorhabditis elegans cel-mir-5548 precursor miRNA

Sequence

1 reads, 0 reads per million, 1 experiments

guuccauccuugaccgccgaacugguguuucauaaaGCCUUCUCACUCUCCACGGCGGUAGGcaAGCCCUGUGGAUUGGAGAAGGAGAagccccacaggaugucccgaaa
....(((((((((.((((.....))))..))).....(((((((.(..(((((((.(((......))))))))))..))))))))...........))))))........

Structure

----guuc      ugaccgccgaacugguguuucauaaaG       A UC       C   AG 
        cauccu                           CCUUCUC C  UCCACGG GGU  G
        ||||||                           ||||||| |  ||||||| |||   
        guagga                           GGAAGAG G  AGGUGUC CCG  c
aaagcccu      ----------------caccccgaAGA       - UU       -   Aa 

Annotation confidence Not enough data

Genome context

chrII: 2284810-2284919 [-]

Mature cel-miR-5548-5p

• Accession: MIMAT0022187
• Description: Caenorhabditis elegans cel-miR-5548-5p mature miRNA
• Sequence: 37 - GCCUUCUCACUCUCCACGGCGGUAGG - 62
• Evidence: experimental ; Illumina [1]

Mature cel-miR-5548-3p

• Accession: MIMAT0022188
• Description: Caenorhabditis elegans cel-miR-5548-3p mature miRNA
• Sequence: 65 - AGCCCUGUGGAUUGGAGAAGGAGA - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21810936
   Age-associated changes in expression of small, noncoding RNAs, including microRNAs, in C. elegans
   "Kato M, Chen X, Inukai S, Zhao H, Slack FJ"
   "RNA (2011) 17:1804-1820