Stem-loop cel-mir-5549

Accession

MI0019070

Description

Caenorhabditis elegans cel-mir-5549 precursor miRNA

Literature search

1 open access papers mention cel-mir-5549
(4 sentences)

Sequence

6655 reads, 61.0 reads per million, 77 experiments

acgagagggggagagauuuuuuugggccuugugaaauuaacgugaguuuucuggUCAUCUGACUAAUCAUGUUGGUUUUUUGUUGGuuuauuuuguuuuuaucuuuguuu
..((.(((((.((((((.....((((((....(((((((((((((......(((((....))))).))))))))))))).....))))))....)))))).))))).)).

Structure

ac  g     g      uuuuu      -uugu             guuuuc     A 
  ga agggg agagau     ugggcc     gaaauuaacguga      uggUC U
  || ||||| ||||||     ||||||     |||||||||||||      |||||  
  uu uuucu uuuuug     auuuGG     UUUUGGUUGUACU      AUCAG C
-u  g     a      -uuuu      UUGUU             -----A     U 

Annotation confidence Not enough data

Genome context

chrIII: 6971976-6972085 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cel-mir-5549

Mature cel-miR-5549-5p

• Accession: MIMAT0022189
• Description: Caenorhabditis elegans cel-miR-5549-5p mature miRNA
• Sequence: 55 - UCAUCUGACUAAUCAUGUUGG - 75
• Evidence: experimental ; Illumina [1]

Mature cel-miR-5549-3p

• Accession: MIMAT0022190
• Description: Caenorhabditis elegans cel-miR-5549-3p mature miRNA
• Sequence: 67 - UCAUGUUGGUUUUUUGUUGG - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21810936
   Age-associated changes in expression of small, noncoding RNAs, including microRNAs, in C. elegans
   "Kato M, Chen X, Inukai S, Zhao H, Slack FJ"
   "RNA (2011) 17:1804-1820