Stem-loop cel-mir-5552

Accession

MI0019073

Description

Caenorhabditis elegans cel-mir-5552 precursor miRNA

Sequence

562 reads, 7 reads per million, 14 experiments

ggucugcuaauuauuuuUGUAGUUUGUAGUCUAGCAGACCaauaccaaaagcuuugggUCUGCCAGACUACAAACCACACAaaucacuagcagacccuuuuuuuuuuuuu
(((((((((...((((.(((.(((((((((((.(((((((................))))))).))))))))))).))).))))...)))))))))..............

Structure

--------------         auu    u   A           A       aauacca 
              ggucugcua   auuu UGU GUUUGUAGUCU GCAGACC       a
              |||||||||   |||| ||| ||||||||||| |||||||        
              ccagacgau   uaaA ACA CAAACAUCAGA CGUCUgg       a
uuuuuuuuuuuuuc         cac    C   C           C       guuucga 

Annotation confidence Not enough data

Genome context

chrV: 18036732-18036841 [+]

Mature cel-miR-5552-5p

• Accession: MIMAT0022195
• Description: Caenorhabditis elegans cel-miR-5552-5p mature miRNA
• Sequence: 18 - UGUAGUUUGUAGUCUAGCAGACC - 40
• Evidence: experimental ; Illumina [1]

Mature cel-miR-5552-3p

• Accession: MIMAT0022196
• Description: Caenorhabditis elegans cel-miR-5552-3p mature miRNA
• Sequence: 59 - UCUGCCAGACUACAAACCACACA - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21810936
   Age-associated changes in expression of small, noncoding RNAs, including microRNAs, in C. elegans
   "Kato M, Chen X, Inukai S, Zhao H, Slack FJ"
   "RNA (2011) 17:1804-1820