Stem-loop sbi-MIR5565e

Accession

MI0019098

Description

Sorghum bicolor sbi-MIR5565e precursor miRNA MIR5565

Gene
family

RF04087; MIR5565

Sequence

uaaacgguaagguuUUGUUUGGAUGUUGUCGGAuucaccucaauccacauguuuuggaguagauuaggguggaauuuaguucaaguuccacuccaauucaccccaauacauguggauugaugcgaauccaacuacauccaaacaaggccuaaauauaaguguggauaguguagauaaauauagaagagauagauaugaggauggaaaaggauc
.........(((((((((((((((((.((.((((((.(.(((((((((((((.((((.((.((((.(((((((((((.....))))))))))).)))).)).)))).))))))))))))).).)))))).)).)))))))))))))))))...((((..(((......((((......))))......)))..))))................

Structure

------------------------------------------------------uaaacggua                 U  C      a c             u    a  a    a           a 
                                                               agguuUUGUUUGGAUGU GU GGAuuc c ucaauccacaugu uugg gu gauu ggguggaauuu g
                                                               ||||||||||||||||| || |||||| | ||||||||||||| |||| || |||| ||||||||||| u
                                                               uccggaacaaaccuaca ca ccuaag g aguuagguguaca aacc ca uuaa cucaccuugaa u
cuaggaaaagguaggaguauagauagagaagauauaaauagaugugauaggugugaauauaaa                 u  a      c u             u    c  c    c           c 

Annotation confidence Not enough data

Genome context

chr9: 6068284-6068496 [+]

Mature sbi-miR5565e

• Accession: MIMAT0022243
• Description: Sorghum bicolor sbi-miR5565e mature miRNA
• Sequence: 15 - UUGUUUGGAUGUUGUCGGA - 33
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 21907786
   Identification and temporal expression analysis of conserved and novel microRNAs in Sorghum
   "Zhang L, Zheng Y, Jagadeeswaran G, Li Y, Gowdu K, Sunkar R"
   "Genomics (2011) 98:460-468