Accession
MI0019246
Description
Arabidopsis thaliana
ath-MIR5642b precursor miRNA
Literature search
1 open access papers mention ath-MIR5642b
(2 sentences)
(2 sentences)
Sequence
cauggauccgccuaggcugucccgagugugagcgaggugugagugucgcccaugggcaucgacaccuugcggcuaggaacuggaacgagacggguagcaaagauuucgaguagcacuucauacuaccguggguuuuuuaaaccuuccgaguuuuguugauguguuuccgagaauuagcaaaccguaacgaagauguucuuggcaaccaucuuuugaugggaguccggcuguucgaaagccggccaagggugaugaacgaaaugugaacccuugucucgccuagguuggaugggcgugcuucguuggaaagcauggauccgccuaggcugucccgaagguaUCUCGCGCUUGUACGGCUUUggcuuggauucg
...(((((((((.(((((((..((((((((((((((((((..(((((.......)))))..))))))))).(((((((((.....((..((((...((.((..(((((.(.(((((.(((((..((((.((((((...))))))..)).))..)).))).))))).)))))).)).))...))))..)).....)))))))))..(((((....)))))..(.((((((.......)))))))(((((((.....((.....))..)))))))....((((((((.((((...((((((((....).))))))).))))))))))))...((....))....))))))))).))))))).)))..)))))).
...(((((((((.(((((((..((((((((((((((((((..(((((.......)))))..))))))))).(((((((((.....((..((((...((.((..(((((.(.(((((.(((((..((((.((((((...))))))..)).))..)).))).))))).)))))).)).))...))))..)).....)))))))))..(((((....)))))..(.((((((.......)))))))(((((((.....((.....))..)))))))....((((((((.((((...((((((((....).))))))).))))))))))))...((....))....))))))))).))))))).)))..)))))).
Structure
cau -- u cc ---------------------------------------------------------------------------------------------------gcgaggugugagugucgcccaugggcaucgacaccuugcg uggaa ag gua a ga a u u - cu - -u u ggaucc gcc aggcugu cgaguguga gcuaggaac cg acgg gc aa uuucg g agcac uca ua ac cg ggguuu |||||| ||| ||||||| ||||||||| ||||||||| || |||| || || ||||| | ||||| ||| || || || |||||| u cuuagg cgg UUCGGCA GUUCGCGCU cgguucuug gc ugcc cg uu agagc c uugug agu gu ug gc uccaaa --g uu U -U CUauggaagcccugucggauccgccuagguacgaaagguugcuucgugcggguagguuggauccgcucuguucccaaguguaaagcaaguagugggaaccggccgaaagcuugucggccugaggguaguuuucuaccaa uagaa aa aaa a -a - u u u uu a cu u
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
chr2: 2805-3176 [+]
Database links
Mature ath-miR5642b
| Accession | MIMAT0022435 |
| Description | Arabidopsis thaliana ath-miR5642b mature miRNA |
| Sequence | 341 - UCUCGCGCUUGUACGGCUUU - 360 |
| Evidence |
experimental
Illumina [1] |
References
|
