Accession
MI0019246
Description
Arabidopsis thaliana
ath-MIR5642b precursor miRNA
Literature search
1 open access papers mention ath-MIR5642b
(2 sentences)
(2 sentences)
Sequence
4430340
reads,
11982.0
reads per million, 185 experiments
cauggauccgccuaggcugucccgagugugagcgaggugugagugucgcccaugggcaucgacaccuugcggcuAGGAACUGGAACGAGACGGGUagcaaagauuucgaguagcacuucauacuaccguggguuuuuuaaaccuuccgaguuuuguugauguguuuccgagaauuagcaaaccguaacgaagauguucuuggcaaccaucuuuugaugggaguccggcuguucgaaagccggccaagggugaugaacgaaaugugaacccuugucucgccuagguuggaugggcgugcuucguuggaaagcauggauccgccuaggcugucccgaagguaUCUCGCGCUUGUACGGCUUUggcuuggauucg
...(((((((((.(((((((..((((((((((((((((((..(((((.......)))))..))))))))).(((((((((.....((..((((...((.((..(((((.(.(((((.(((((..((((.((((((...))))))..)).))..)).))).))))).)))))).)).))...))))..)).....)))))))))..(((((....)))))..(.((((((.......)))))))(((((((.....((.....))..)))))))....((((((((.((((...((((((((....).))))))).))))))))))))...((....))....))))))))).))))))).)))..)))))).
...(((((((((.(((((((..((((((((((((((((((..(((((.......)))))..))))))))).(((((((((.....((..((((...((.((..(((((.(.(((((.(((((..((((.((((((...))))))..)).))..)).))).))))).)))))).)).))...))))..)).....)))))))))..(((((....)))))..(.((((((.......)))))))(((((((.....((.....))..)))))))....((((((((.((((...((((((((....).))))))).))))))))))))...((....))....))))))))).))))))).)))..)))))).
Structure
cau -- u cc ---------------------------------------------------------------------------------------------------gcgaggugugagugucgcccaugggcaucgacaccuugcg UGGAA AG GUa a ga a u u - cu - -u u ggaucc gcc aggcugu cgaguguga gcuAGGAAC CG ACGG gc aa uuucg g agcac uca ua ac cg ggguuu |||||| ||| ||||||| ||||||||| ||||||||| || |||| || || ||||| | ||||| ||| || || || |||||| u cuuagg cgg UUCGGCA GUUCGCGCU cgguucuug gc ugcc cg uu agagc c uugug agu gu ug gc uccaaa --g uu U -U CUauggaagcccugucggauccgccuagguacgaaagguugcuucgugcggguagguuggauccgcucuguucccaaguguaaagcaaguagugggaaccggccgaaagcuugucggccugaggguaguuuucuaccaa uagaa aa aaa a -a - u u u uu a cu u
Annotation confidence
Low
Do you think this miRNA is real?
Genome context
chr2: 2805-3176 [+]
Database links
Mature ath-miR5642b-5p
| Accession | MIMAT0053960 |
| Description | Arabidopsis thaliana ath-miR5642b-5p mature miRNA |
| Sequence | 75 - AGGAACUGGAACGAGACGGGU - 95 |
| Evidence |
experimental
unknown |
Mature ath-miR5642b-3p
| Accession | MIMAT0022435 |
| Description | Arabidopsis thaliana ath-miR5642b-3p mature miRNA |
| Sequence | 341 - UCUCGCGCUUGUACGGCUUU - 360 |
| Evidence |
experimental
Illumina [1] |
References
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