Stem-loop bra-MIR5716

Accession

MI0019327

Description

Brassica rapa bra-MIR5716 precursor miRNA

Literature search

3 open access papers mention bra-MIR5716
(3 sentences)

Sequence

gauccagacgugaccaaccaucgacuucuaguucccuucuuuccuuuucauuuauuguuuauaucuucacauaucuaaagaguuucuucagucucuaugaaaauuuacugaagaaauacuUUGGAUAAUUGAAGAUAUAAAcaaugaaugacaagaaauggaaaggaaccagaagacaaaugguuggucacgucuggaucuuuuuc
(((((((((((((((((((((...(((((.(((((.((((...(((.((((((((((((((((((((((..(((((((((.(((((((((((..............))))))))))).)))))))))..)))))))))))))))))))))).)))....)))).))))).)))))....)))))))))))))))))))))......

Structure

------                     -cga     a     c    -uuc   u                      ca         a           cucuau 
      gauccagacgugaccaaccau    cuucu guucc uucu    cuu ucauuuauuguuuauaucuuca  uaucuaaag guuucuucagu      g
      |||||||||||||||||||||    ||||| ||||| ||||    ||| ||||||||||||||||||||||  ||||||||| |||||||||||       
      cuaggucugcacugguuggua    gaaga caagg aagg    gaa aguaaguaacAAAUAUAGAAGU  AUAGGUUuc uaaagaaguca      a
cuuuuu                     aaca     c     a    uaaa   c                      UA         a           uuuaaa 

Annotation confidence Not enough data

Genome context

chrA1: 26758337-26758542 [+]

Mature bra-miR5716

• Accession: MIMAT0023013
• Description: Brassica rapa bra-miR5716 mature miRNA
• Sequence: 121 - UUGGAUAAUUGAAGAUAUAAA - 141
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22025521
   Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa
   "Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y"
   "J Exp Bot (2012) 63:1025-1038