Stem-loop bra-MIR5721

Accession

MI0019333

Description

Brassica rapa bra-MIR5721 precursor miRNA

Sequence

gggcaucuuuauccccacuccauaauuuacuccAAAAAUGGAGUGAGAAAUGGAguauggacaaaaaauaaaaaaucuuuauauuuauggaguaaucacuuuuuuguuucuucacuacuucauuuuccacuccauuuugcaguaaauuauggaguggagaugaaaaugcucuuaguaa
((((((.((((((.(((((((((((((((((.(((((.(((((((.((((((((((((((((((((((........((((((....)))))).......)))))))))....)).))))))))))).)))))))))))).))))))))))))))))).)))))).)))))).......

Structure

-------      c      c                 c     A       A           -  ----         uaaaaaau      a 
       gggcau uuuauc ccacuccauaauuuacu cAAAA UGGAGUG GAAAUGGAgua ug    gacaaaaaa        cuuuau u
       |||||| |||||| ||||||||||||||||| ||||| ||||||| ||||||||||| ||    |||||||||        ||||||  
       cucgua aaguag ggugagguauuaaauga guuuu accucac uuuuacuucau ac    uuguuuuuu        gaggua u
aaugauu      a      a                 c     -       c           c  uucu         -cacuaau      u 

Annotation confidence Not enough data

Genome context

chrA2: 24366844-24367021 [-]

Mature bra-miR5721

• Accession: MIMAT0023019
• Description: Brassica rapa bra-miR5721 mature miRNA
• Sequence: 34 - AAAAAUGGAGUGAGAAAUGGA - 54
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22025521
   Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa
   "Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y"
   "J Exp Bot (2012) 63:1025-1038