Stem-loop tur-mir-2-1

Accession

MI0019366

Description

Tetranychus urticae tur-mir-2-1 precursor miRNA

Literature search

1 open access papers mention tur-mir-2-1
(5 sentences)

Sequence

agcauuccuccgagUCGUCAAAGGGGUUGUGAAAUGuucauuguaagcaaauccaUAUCACAGCCAGCUUUGAUGAUUuugauaaaaugcg
.(((((..((.((((((((((((.((((((((.(((....(((....)))...))).))))))))..)))))))))))).))...))))).

Structure

a     -cc  c            -G        A   uuca   u 
 gcauu   uc gagUCGUCAAAG  GGUUGUGA AUG    uug a
 |||||   || ||||||||||||  |||||||| |||    |||  
 cguaa   ag uUUAGUAGUUUC  CCGACACU Uac    aac a
g     aau  u            GA        A   -cua   g 

Annotation confidence Not enough data

Genome context

emb|HE587310|: 2523041-2523131 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from tur-mir-2-1

Mature tur-miR-2-5p

• Accession: MIMAT0023042
• Description: Tetranychus urticae tur-miR-2-5p mature miRNA
• Sequence: 15 - UCGUCAAAGGGGUUGUGAAAUG - 36
• Evidence: experimental ; Illumina [1]

Mature tur-miR-2-3p

• Accession: MIMAT0023043
• Description: Tetranychus urticae tur-miR-2-3p mature miRNA
• Sequence: 56 - UAUCACAGCCAGCUUUGAUGAUU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22113690
   The genome of Tetranychus urticae reveals herbivorous pest adaptations
   "Grbic M, Van Leeuwen T, Clark RM, Rombauts S, Rouze P, Grbic V, Osborne EJ, Dermauw W, Ngoc PC, Ortego F, Hernandez-Crespo P, Diaz I, Martinez M, Navajas M, Sucena E, Magalhaes S, Nagy L, Pace RM, Djuranovic S, Smagghe G, Iga M, Christiaens O, Veenstra JA"
   "Nature (2011) 479:487-492