miRBase entry: tur-mir-5730a

Stem-loop tur-mir-5730a


Accession
MI0019370
Description
Tetranychus urticae tur-mir-5730a precursor miRNA


Sequence


aUCACCGGGAUAAAGGCAUCUUAucgcuugacuuauccucaucauucccuagucaucaaucgauuCGGUGGCUUUUUCCUCGGUGGA
..((((((((.((((.((((..((((..(((((.................))))).....))))..)))).)))).))).)))))..

Structure
aU     -   U    G    UU    ---cu     uauccuc 
  CACCG GGA AAAG CAUC  Aucg     ugacu       a
  ||||| ||| |||| ||||  ||||     |||||       u
  GUGGC CCU UUUC GUGG  uagc     acuga       c
AG     U   U    G    Cu    uaacu     ucccuua 


Annotation confidence Not enough data
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Genome context
emb|HE587309|: 1096310-1096396 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from tur-mir-5730a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tur-miR-5730a-5p

Accession MIMAT0023050
Description Tetranychus urticae tur-miR-5730a-5p mature miRNA
Sequence 2 - UCACCGGGAUAAAGGCAUCUUA - 23
Evidence experimental
Illumina [1]

Mature tur-miR-5730a-3p

Accession MIMAT0023051
Description Tetranychus urticae tur-miR-5730a-3p mature miRNA
Sequence 66 - CGGUGGCUUUUUCCUCGGUGGA - 87
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22113690
    The genome of Tetranychus urticae reveals herbivorous pest adaptations
    "Grbic M, Van Leeuwen T, Clark RM, Rombauts S, Rouze P, Grbic V, Osborne EJ, Dermauw W, Ngoc PC, Ortego F, Hernandez-Crespo P, Diaz I, Martinez M, Navajas M, Sucena E, Magalhaes S, Nagy L, Pace RM, Djuranovic S, Smagghe G, Iga M, Christiaens O, Veenstra JA"
    "Nature (2011) 479:487-492