Stem-loop tur-mir-5731-1

Accession

MI0019373

Description

Tetranychus urticae tur-mir-5731-1 precursor miRNA

Sequence

uguacacuuguuuuGACACAGCCUAGGAGCACAUGuagcagaauaaagauuuucauauuuuuuucugcauaaaaaacuacaUGGGCACCUAGGCUAUGUCCAaucagguguau
.(((((((((.((.((((.((((((((.((.((((((((((((.((((((......)))))))))))).........)))))).)).)))))))).)))).)).)))))))))

Structure

u         u  u    C        A  A      ---------      u      uu 
 guacacuug uu GACA AGCCUAGG GC CAUGua         gcagaa aaagau  u
 ||||||||| || |||| |||||||| || ||||||         |||||| ||||||   
 uauguggac aA CUGU UCGGAUCC CG GUacau         cgucuu uuuuua  c
-         u  C    A        A  G      caaaaaaua      -      ua 

Annotation confidence Not enough data

Genome context

emb|HE587494|: 1941-2053 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tur-mir-5731-1

Mature tur-miR-5731-1-5p

• Accession: MIMAT0023056
• Description: Tetranychus urticae tur-miR-5731-1-5p mature miRNA
• Sequence: 15 - GACACAGCCUAGGAGCACAUG - 35
• Evidence: experimental ; Illumina [1]

Mature tur-miR-5731-1-3p

• Accession: MIMAT0023057
• Description: Tetranychus urticae tur-miR-5731-1-3p mature miRNA
• Sequence: 82 - UGGGCACCUAGGCUAUGUCCA - 102
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22113690
   The genome of Tetranychus urticae reveals herbivorous pest adaptations
   "Grbic M, Van Leeuwen T, Clark RM, Rombauts S, Rouze P, Grbic V, Osborne EJ, Dermauw W, Ngoc PC, Ortego F, Hernandez-Crespo P, Diaz I, Martinez M, Navajas M, Sucena E, Magalhaes S, Nagy L, Pace RM, Djuranovic S, Smagghe G, Iga M, Christiaens O, Veenstra JA"
   "Nature (2011) 479:487-492