Stem-loop tur-mir-87a

Accession

MI0019378

Description

Tetranychus urticae tur-mir-87a precursor miRNA

Sequence

uugugcauuuuguugaacAAGCCGGAACCUUUGACUCAACcuuaugaaguauucaauuuagUUGAGCAAAGUUUCAGGUGUGUccaaugaaacguccac
.((.((.((((((((.(((.(((.(((.(((((.((((((....((((...)))).....))))))))))).))).))).))).)))))))).)).)).

Structure

u  u  a        a   A   G   C     A      -cuua    g 
 ug gc uuuuguug acA GCC GAA CUUUG CUCAAC     ugaa  
 || || |||||||| ||| ||| ||| ||||| ||||||     |||| u
 ac ug aaaguaac UGU UGG CUU GAAAC GAGUUg     acuu  
c  c  c        c   G   A   U     -      auuua    a 

Annotation confidence Not enough data

Genome context

emb|HE587301|: 4415209-4415307 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from tur-mir-87a

Mature tur-miR-87a-5p

• Accession: MIMAT0023066
• Description: Tetranychus urticae tur-miR-87a-5p mature miRNA
• Sequence: 19 - AAGCCGGAACCUUUGACUCAAC - 40
• Evidence: experimental ; Illumina [1]

Mature tur-miR-87a-3p

• Accession: MIMAT0023067
• Description: Tetranychus urticae tur-miR-87a-3p mature miRNA
• Sequence: 62 - UUGAGCAAAGUUUCAGGUGUGU - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22113690
   The genome of Tetranychus urticae reveals herbivorous pest adaptations
   "Grbic M, Van Leeuwen T, Clark RM, Rombauts S, Rouze P, Grbic V, Osborne EJ, Dermauw W, Ngoc PC, Ortego F, Hernandez-Crespo P, Diaz I, Martinez M, Navajas M, Sucena E, Magalhaes S, Nagy L, Pace RM, Djuranovic S, Smagghe G, Iga M, Christiaens O, Veenstra JA"
   "Nature (2011) 479:487-492