Stem-loop tur-mir-5736a

Accession

MI0019399

Description

Tetranychus urticae tur-mir-5736a precursor miRNA

Sequence

aaauacuuuUGCGGAGUAGACUGGUCAAAUGggucuuaaacaaucaaucaUUUCGCCAAUCUACUGCAAAGaaguauuc
.(((((((((..(.((((((.((((.((((((...............)))))).)))).)))))).)..))))))))).

Structure

a         GC G      C    C      gucuua 
 aauacuuuU  G AGUAGA UGGU AAAUGg      a
 |||||||||  | |||||| |||| ||||||      a
 uuaugaaGA  C UCAUCU ACCG UUUacu      c
c         AA G      A    C      aacuaa 

Annotation confidence Not enough data

Genome context

emb|HE587301|: 1424667-1424745 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from tur-mir-5736a

Mature tur-miR-5736a-5p

• Accession: MIMAT0023100
• Description: Tetranychus urticae tur-miR-5736a-5p mature miRNA
• Sequence: 10 - UGCGGAGUAGACUGGUCAAAUG - 31
• Evidence: experimental ; Illumina [1]

Mature tur-miR-5736a-3p

• Accession: MIMAT0023101
• Description: Tetranychus urticae tur-miR-5736a-3p mature miRNA
• Sequence: 51 - UUUCGCCAAUCUACUGCAAAG - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22113690
   The genome of Tetranychus urticae reveals herbivorous pest adaptations
   "Grbic M, Van Leeuwen T, Clark RM, Rombauts S, Rouze P, Grbic V, Osborne EJ, Dermauw W, Ngoc PC, Ortego F, Hernandez-Crespo P, Diaz I, Martinez M, Navajas M, Sucena E, Magalhaes S, Nagy L, Pace RM, Djuranovic S, Smagghe G, Iga M, Christiaens O, Veenstra JA"
   "Nature (2011) 479:487-492