Stem-loop tur-mir-279a

Accession

MI0019403

Description

Tetranychus urticae tur-mir-279a precursor miRNA

Sequence

cuggacacuuugacuggAUGAAUGCGUUUCUAGACCAUGuucauguugaacuauucaUGACUAGAUCCACAUUCAUCCAgacagccaa
.(((.....(((.(((((((((((.(..(((((..((((((((...))))).....))).)))))..).))))))))))).)))))).

Structure

c   acacu   a           C UU     AC   -----     u 
 ugg     uug cuggAUGAAUG G  UCUAG  CAU     Guuca  
 |||     ||| ||||||||||| |  |||||  |||     ||||| g
 acc     gac gACCUACUUAC C  AGAUC  GUa     caagu  
a   -----   a           A CU     -A   cuuau     u 

Annotation confidence Not enough data

Genome context

emb|HE587308|: 2463758-2463845 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tur-mir-279a

Mature tur-miR-279a-5p

• Accession: MIMAT0023106
• Description: Tetranychus urticae tur-miR-279a-5p mature miRNA
• Sequence: 18 - AUGAAUGCGUUUCUAGACCAUG - 39
• Evidence: experimental ; Illumina [1]

Mature tur-miR-279a-3p

• Accession: MIMAT0023107
• Description: Tetranychus urticae tur-miR-279a-3p mature miRNA
• Sequence: 58 - UGACUAGAUCCACAUUCAUCCA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22113690
   The genome of Tetranychus urticae reveals herbivorous pest adaptations
   "Grbic M, Van Leeuwen T, Clark RM, Rombauts S, Rouze P, Grbic V, Osborne EJ, Dermauw W, Ngoc PC, Ortego F, Hernandez-Crespo P, Diaz I, Martinez M, Navajas M, Sucena E, Magalhaes S, Nagy L, Pace RM, Djuranovic S, Smagghe G, Iga M, Christiaens O, Veenstra JA"
   "Nature (2011) 479:487-492