Stem-loop sha-mir-181a-2

Accession

MI0019596

Description

Sarcophilus harrisii sha-mir-181a-2 precursor miRNA

Sequence

auggagagcaaccuacagauaacuucagugAACAUUCAACGCUGUCGGUgaguuuucagauuuaaaagaaaccaucgaccguugacuguaccuugagguuuaucagaugc
.................(((((((((((.(.(((.((((((..(((((((.(((((...........)))))))))))))))))).))).).)))))).)))))......

Structure

auggagagcaaccuaca     -      u A   U      CU       a     caga 
                 gauaa cuucag g ACA UCAACG  GUCGGUg guuuu    u
                 ||||| |||||| | ||| ||||||  ||||||| |||||    u
                 cuauu ggaguu c ugu aguugc  cagcuac caaag    u
-----------cguaga     u      c a   c      --       -     aaaa 

Annotation confidence Not enough data

Genome context

GL834637.1: 2485835-2485944 [+]

Mature sha-miR-181a-5p

• Accession: MIMAT0022770
• Description: Sarcophilus harrisii sha-miR-181a-5p mature miRNA
• Sequence: 31 - AACAUUCAACGCUGUCGGU - 49
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87