Stem-loop sha-mir-138-1

Accession

MI0019597

Description

Sarcophilus harrisii sha-mir-138-1 precursor miRNA

Sequence

cagcccccacagauucugguacguugcugcAGCUGGUGUUGUGAAUCAGGCCGacaagcagcucauccuauuacccggcuauuucaccacaccaggguugcaucauaccgcucuccuucagaaggcugagaagacgcauggaauccagcc
...........((((((((((.(.(((.((..(((((((.(((((...(((((......................)))))..))))).))))))).)).))).).))))(((((.((.(((....))))).))).))..)))))).....

Structure

cagcccccaca      ------------------------------    c u   u  AG       U     UCA     acaagcagcu 
           gauucu                              ggua g ugc gc  CUGGUGU GUGAA   GGCCG          c
           ||||||                              |||| | ||| ||  ||||||| |||||   |||||           
           cuaagg                              ccau c acg ug  gaccaca cacuu   ucggc          a
------ccgac      uacgcagaagagucggaagacuuccucucg    a u   u  -g       c     -ua     ccauuauccu 

Annotation confidence Not enough data

Genome context

GL834650.1: 1024447-1024596 [+]

Mature sha-miR-138

• Accession: MIMAT0022771
• Description: Sarcophilus harrisii sha-miR-138 mature miRNA
• Sequence: 31 - AGCUGGUGUUGUGAAUCAGGCCG - 53
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87