Stem-loop sha-mir-352

Accession

MI0019598

Description

Sarcophilus harrisii sha-mir-352 precursor miRNA

Sequence

gucuauucagugguccgucucucuuaccagagagcaguuuggaagcaauggaaggugcaucuaggacugucuaaccugagaauggugaaucucagggucaAUCUCAGGUUUGUCAGCCCAUgaggugccuucucuagaccucgaaucccg
....((((.(.((((.(.((((((....)))))))...(((....))).(((((((((.((..((.(((.(.(((((((((.((((((...)))...))).))))))))).).))).))..)).)))))))))...)))).)))))....

Structure

gucu    a u    cgucucucuuaccagagagcaguuuggaagcaau         a  ua  a   u u         a   ---   a 
    auuc g gguc                                  ggaaggugc uc  gg cug c aaccugaga ugg   uga  
    |||| | ||||                                  ||||||||| ||  || ||| | ||||||||| |||   ||| u
    uaag c ccag                                  ucuuccgug ag  CC GAC G UUGGACUCU acu   acu  
gccc    - u    -------------------------------auc         g  UA  C   U U         A   ggg   c 

Annotation confidence Not enough data

Genome context

GL834659.1: 2574240-2574389 [+]

Mature sha-miR-352

• Accession: MIMAT0022772
• Description: Sarcophilus harrisii sha-miR-352 mature miRNA
• Sequence: 101 - AUCUCAGGUUUGUCAGCCCAU - 121
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87