Stem-loop sha-mir-1329

Accession

MI0019599

Description

Sarcophilus harrisii sha-mir-1329 precursor miRNA

Sequence

gaaauaccucaaaaguagguugagcaugauuugcuguucucaugguccgugugaugugugcaugcuacccagagggaggaaucuuggucugguuguaggggUACAGUGAUCGGGUUAUGAuggauuuucucaaguaaucaccucauaacu
.....(((((....).))))((((..(((((.(((((((((((((((((.((.((.(((((.(.(((((((((..(((....)))..)))))..)))).)))))))).)))))))))))).)))).......)))))))).)))).....

Structure

gaaauaccucaaaaguaggu    ca     u   -------    -          u  g  g     a g    --     gg   g 
                    ugag  ugauu gcu       guuc ucaugguccg gu au ugugc u cuac  ccaga  gag a
                    ||||  ||||| |||       |||| |||||||||| || || ||||| | ||||  |||||  |||  
                    acuc  acuaa uga       uagg AGUAUUGGGC UA UG ACAUg g gaug  ggucu  uuc a
---------------ucaau    -c     -   acucuuu    u          -  G  -     - g    uu     gg   u 

Annotation confidence Not enough data

Genome context

GL834685.1: 638211-638360 [-]

Mature sha-miR-1329

• Accession: MIMAT0022773
• Description: Sarcophilus harrisii sha-miR-1329 mature miRNA
• Sequence: 102 - UACAGUGAUCGGGUUAUGA - 120
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87