miRBase entry: sha-mir-340a

Stem-loop sha-mir-340a


Accession
MI0019601
Description
Sarcophilus harrisii sha-mir-340a precursor miRNA


Sequence


auucccaccuccaauuaaaacacauuggcaucaguaugaaggaugagcauauacaaggcaugacuauaaaguaaugagacugauccugcacacaaacaccAGUCUCAUUACUUUAUAGUCAcacccuguaucuuaaagaucuccagucau
..........(((((........))))).......((((.(((((((...(((((.((..((((((((((((((((((((((.................))))))))))))))))))))))..)).)))))))))......)))..))))

Structure
auucccaccuccaauuaaaacacauuggcaucagu    -a   ------    cau     a  ca                      auccugc 
                                   auga  gga      ugag   auaca gg  ugacuauaaaguaaugagacug       a
                                   ||||  |||      ||||   ||||| ||  ||||||||||||||||||||||       c
                                   uacu  ccu      auuc   uaugu cc  ACUGAUAUUUCAUUACUCUGAc       a
-----------------------------------    ga   cuagaa    ---     c  ac                      cacaaac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL834730.1: 741012-741161 [+]

Database links

Mature sha-miR-340a-3p

Accession MIMAT0022775
Description Sarcophilus harrisii sha-miR-340a-3p mature miRNA
Sequence 101 - AGUCUCAUUACUUUAUAGUCA - 121
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20044575
    The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
    "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
    "Science (2010) 327:84-87