Stem-loop sha-mir-340

Accession

MI0019601

Description

Sarcophilus harrisii sha-mir-340 precursor miRNA

Sequence

auucccaccuccaauuaaaacacauuggcaucaguaugaaggaugagcauauacaaggcaugacuauaaaguaaugagacugauccugcacacaaacaccAGUCUCAUUACUUUAUAGUCAcacccuguaucuuaaagaucuccagucau
..........(((((........))))).......((((.(((((((...(((((.((..((((((((((((((((((((((.................))))))))))))))))))))))..)).)))))))))......)))..))))

Structure

auucccaccuccaauuaaaacacauuggcaucagu    -a   ------    cau     a  ca                      auccugc 
                                   auga  gga      ugag   auaca gg  ugacuauaaaguaaugagacug       a
                                   ||||  |||      ||||   ||||| ||  ||||||||||||||||||||||       c
                                   uacu  ccu      auuc   uaugu cc  ACUGAUAUUUCAUUACUCUGAc       a
-----------------------------------    ga   cuagaa    ---     c  ac                      cacaaac 

Annotation confidence Not enough data

Genome context

GL834730.1: 741012-741161 [+]

Mature sha-miR-340

• Accession: MIMAT0022775
• Description: Sarcophilus harrisii sha-miR-340 mature miRNA
• Sequence: 101 - AGUCUCAUUACUUUAUAGUCA - 121
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87