Stem-loop sha-mir-9

Accession

MI0019609

Description

Sarcophilus harrisii sha-mir-9 precursor miRNA

Sequence

gcaaagucuugugagggaagugaguuguuaUCUUUGGUUAUCUAGCUGUAUgaguguauuggucuucauaaagcuagauaaccgaaaguaaaaacuccuucaagaucuucgaggagcguaugaaaaugaaagaccacuucaagaaacagu
((....((((.(((((((((.(((((.((((.(((((((((((((((.((((((.(.......))))))).))))))))))))))).)))).))))))))).....))))))))))).........((((.......)))).........

Structure

---------------------------------  aaag    g     -----    u     g    C               G      u ua 
                                 gc    ucuu ugagg     gaag gaguu uuaU UUUGGUUAUCUAGCU UAUgag g  u
                                 ||    |||| |||||     |||| ||||| |||| ||||||||||||||| |||||| |  u
                                 cg    agga gcuuc     cuuc cucaa aaug aagccaauagaucga auacuu c  g
ugacaaagaacuucaccagaaaguaaaaguaug  ----    -     uagaa    -     a    a               a      - ug 

Annotation confidence Not enough data

Genome context

GL841279.1: 926517-926666 [+]

Mature sha-miR-9

• Accession: MIMAT0022783
• Description: Sarcophilus harrisii sha-miR-9 mature miRNA
• Sequence: 31 - UCUUUGGUUAUCUAGCUGUAU - 51
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87