miRBase entry: sha-mir-23b

Stem-loop sha-mir-23b

Accession

MI0019614

Description

Sarcophilus harrisii sha-mir-23b precursor miRNA

Sequence

cuuuuguugugaaaguaugaacucaagaggacaccaugauuuucuugagugcucuggcugcuuggguuccuggcaugcugauuugugacuuaagauuaaaAUCACAUUGCCAGGGAUUAccacgcagccaugacguuggcugcucuucca
.......((.(((((((...(((((((((((........)))))))))))(((((((((((.(((((((((((((((.((((((..............)))))))).))))))))))..))).))))))).)).))....)))).)))))

Structure

cuuuugu  u   -    ugaacucaagaggacaccaugauuuucuugagu  -  -       u   --          -  c      gugacu 
       ug gaa agua                                 gc uc uggcugc ugg  guuccuggca ug ugauuu      u
       || ||| ||||                                 || || ||||||| |||  |||||||||| || ||||||       
       ac cuu ucgu                                 ug ag accgacg acc  UAGGGACCGU AC ACUAaa      a
-------  -   c    -----------------------------cggu  c  u       c   AU          U  -      auuaga

Annotation confidence Not enough data

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Genome context

GL841474.1: 1159813-1159962 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from sha-mir-23b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sha-miR-23b

Accession	MIMAT0022788
Description	Sarcophilus harrisii sha-miR-23b mature miRNA
Sequence	101 - AUCACAUUGCCAGGGAUUA - 119
Evidence	experimental Illumina [1]

References

PubMed ID: 20044575
The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
"Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
"Science (2010) 327:84-87