Stem-loop sha-mir-1546

Accession

MI0019622

Description

Sarcophilus harrisii sha-mir-1546 precursor miRNA

Sequence

cggcacucggagcugcagccuuggaagaaaAUAGGGAUUCUGAGAGGUGGAagguauuuugucucacuuccaucccugagaaucccugauucccgccaaggcaucuuccuucuguuccagcuuuuaucggacagccuccggucucggcgg
(((.((.((((((((..(((((((.......((((((((((.((.((((((((.............)))))))).)).)))))))))).......))))))).............(((..........)))))).))))))).)))....

Structure

----   c  u     -   ---------------------------ca       aagaaaA          G  A        guauu 
    cgg ac cggag cug                             gccuugg       UAGGGAUUCU AG GGUGGAag     u
    ||| || ||||| |||                             |||||||       |||||||||| || ||||||||     u
    gcu ug gccuc gac                             cggaacc       gucccuaaga uc cuaccuuc     g
ggcg   c  -     c   aggcuauuuucgaccuugucuuccuucua       gcccuua          g  c        acucu 

Annotation confidence Not enough data

Genome context

GL842385.1: 61284-61433 [+]

Mature sha-miR-1546

• Accession: MIMAT0022795
• Description: Sarcophilus harrisii sha-miR-1546 mature miRNA
• Sequence: 31 - AUAGGGAUUCUGAGAGGUGGA - 51
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87