Stem-loop sha-mir-25

Accession

MI0019648

Description

Sarcophilus harrisii sha-mir-25 precursor miRNA

Sequence

ggggggggcauuagagcaggacucuucucccuuacaggccaucuggacuggccaguguugagaggcggagacuugggcaauugcugaacacugcccugggCAUUGCACUUGUCUCGGUCugacagugcuggcaaaacacagcacauccug
((((((((....((((.....)))))))))))).((((((....((((.((.(((((((.((.(((((....((.(((....))).))..))))))).)))))))..)).)))).))))))...((((((........))))))......

Structure

ggggggggcauuagagcaggacucuucucccuua      aucu    u  -c       g  a     agac  g   a 
                                  caggcc    ggac gg  caguguu ag ggcgg    uu ggc a
                                  ||||||    |||| ||  ||||||| || |||||    || |||  
                                  guCUGG    UCUG UC  GUUACgg uc ccguc    aa ucg u
-----guccuacacgacacaaaacggucgugaca      ---C    U  AC       g  -     --ac  g   u 

Annotation confidence Not enough data

Genome context

GL856864.1: 888073-888222 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sha-mir-25

Mature sha-miR-25

• Accession: MIMAT0022820
• Description: Sarcophilus harrisii sha-miR-25 mature miRNA
• Sequence: 101 - CAUUGCACUUGUCUCGGUC - 119
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87