Stem-loop sha-mir-497

Accession

MI0019649

Description

Sarcophilus harrisii sha-mir-497 precursor miRNA

Sequence

cuacucccaaaucccauccugccuccgcccCAGCAGCACACUGUGGUUUGUucaguguuguggccaaguccaaaccacacugugguguuagagugaggguaaggaaggcaucacugccaccaccacagcuuggaccuggagcaggacacc
((.((((....(((..((((((((.(((.(.((((.((((.(((((((((..(.((......))...)..))))))))).)))).)))).).))).)))).)))).((((....)))).............)))...)))).))......

Structure

------  a    caaa   ------------------------ca    -    c   c C    G    C         Uu --a  gu 
      cu cucc    ucc                          uccu gccu cgc c AGCA CACA UGUGGUUUG  c   gu  u
      || ||||    |||                          |||| |||| ||| | |||| |||| |||||||||  |   ||   
      ga gagg    agg                          agga uggg gug g uugu gugu acaccaaac  g   cg  g
ccacag  c    -ucc   uucgacaccaccaccgucacuacgga    a    a   a a    g    c         cu aac  gu 

Annotation confidence Not enough data

Genome context

GL858641.1: 5112-5261 [+]

Mature sha-miR-497

• Accession: MIMAT0022821
• Description: Sarcophilus harrisii sha-miR-497 mature miRNA
• Sequence: 31 - CAGCAGCACACUGUGGUUUGU - 51
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87