Stem-loop sha-let-7i

Accession

MI0019650

Description

Sarcophilus harrisii sha-let-7i precursor miRNA

Literature search

1 open access papers mention sha-let-7i
(1 sentences)

Sequence

ccgcuccagcguccgcaccauggcccuggcUGAGGUAGUAGUUUGUGCUGUuggucggguugugacauugcccgcuguggagauaacugcgcaagcuacugccuugcuagugcuggugaugaucagccgcgggugaagacaauggcccgg
(((..(((..(((..((((...((.(((((.(((((((((((((((((.(((((.(((((.........)))))))........))).)))))))))))))))))))))).((((((....)))))).)).))))..)))..)))..)))

Structure

   cu   gc   cg    aug  -----------------c     U                 U   --------  u     ugu 
ccg  cca  guc  cacc   gc                  cuggc GAGGUAGUAGUUUGUGC GUu        gg cgggu   g
|||  |||  |||  ||||   ||                  ||||| ||||||||||||||||| |||        || |||||   a
ggc  ggu  cag  gugg   cg                  gaucg uuccgucaucgaacgcg caa        uc gcccg   c
   cc   aa   aa    --g  ccgacuaguaguggucgu     -                 u   uagaggug  -     uua 

Annotation confidence Not enough data

Genome context

GL861550.1: 1519507-1519656 [+]

Mature sha-let-7i

• Accession: MIMAT0022822
• Description: Sarcophilus harrisii sha-let-7i mature miRNA
• Sequence: 31 - UGAGGUAGUAGUUUGUGCUGU - 51
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87