Stem-loop sha-mir-1549

Accession

MI0019652

Description

Sarcophilus harrisii sha-mir-1549 precursor miRNA

Sequence

guguuuacgaaaaaagacucguuuugugaggauucgaggccaucuaacggcuuguugcuagguagccgggcucguggguaggagcugcguucacuucugcUUCCGCCCUGCAAGCCCGGuagcugguaacaaauucgcugcguguaggcc
((.(((((((((.........))))))))).))....((((......((((((((((((((.((.(((((((.((((((.(((((.............))))).)))).)).))))))))).))))))))))....))))......))))

Structure

guguuuacgaaaaaagacucguuuugugaggauucga    aucuaa    ----          g  g       c  -    a     ugcgu 
                                     ggcc      cggc    uuguugcuag ua ccgggcu gu gggu ggagc     u
                                     ||||      ||||    |||||||||| || ||||||| || |||| |||||     c
                                     ccgg      gucg    aacaaugguc au GGCCCGA CG CCCG CUUcg     a
-------------------------------------    augugc    cuua          g  -       A  U    C     ucuuc 

Annotation confidence Not enough data

Genome context

GL861612.1: 2123585-2123734 [+]

Mature sha-miR-1549

• Accession: MIMAT0022824
• Description: Sarcophilus harrisii sha-miR-1549 mature miRNA
• Sequence: 101 - UUCCGCCCUGCAAGCCCGG - 119
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87