Stem-loop mtr-MIR396c

Accession

MI0019664

Description

Medicago truncatula mtr-MIR396c precursor miRNA

Literature search

5 open access papers mention mtr-MIR396c
(10 sentences)

Sequence

20433 reads, 158.0 reads per million, 111 experiments

uuuauggauggucuucuuagugguuUUCCACGGCUUUCUUGAACUGuauugcaugguuucucaaugcaacauaauuucaauuagcgcaAUUCAAGAAGGUCGUGGAAAAucacugugaugaucugguucuuuuu
.....((((((((.((.((((((((((((((((((((((((((.(((.((((((.........))))))................))).)))))))))))))))))))))))))).)).))))..)))).....

Structure

uuuau    --    u  u                          C   ---------------a      ggu 
     ggau  gguc uc uagugguuUUCCACGGCUUUCUUGAA UGu                uugcau   u
     ||||  |||| || |||||||||||||||||||||||||| |||                ||||||   u
     cuug  cuag ag gucacuAAAAGGUGCUGGAAGAACUU acg                aacgua   c
uuuuu    gu    u  u                          A   cgauuaacuuuaauac      acu 

Annotation confidence High

Genome context

chr1: 3016845-3016978 [-]

Mature mtr-miR396c-5p

• Accession: MIMAT0055237
• Description: Medicago truncatula mtr-miR396c-5p mature miRNA
• Sequence: 26 - UUCCACGGCUUUCUUGAACUG - 46
• Evidence: experimental ; unknown

Mature mtr-miR396c-3p

• Accession: MIMAT0023119
• Description: Medicago truncatula mtr-miR396c-3p mature miRNA
• Sequence: 89 - AUUCAAGAAGGUCGUGGAAAA - 109
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553