Stem-loop mtr-MIR5744

Accession

MI0019669

Description

Medicago truncatula mtr-MIR5744 precursor miRNA

Sequence

agaguguaggUAGGUAUUUUAAGGAGCACGUUuuaacuuuagugguaaauugacccuuaaaaguuuucagaguaaaaguaguauaaguuagugugaggaauaaaaaggucaaauaaagagggucagaagaaaaaauauuuucuagggcaccauugacucuaggggguaggagccgcacuacuugacuuccuacgugaagauguugucucuaaaaauuaaacuagcuucuuuaauuccuucucacuua
.(((((.(((.(((.(((..(((((((..((((....(((((........((((((((.....((((((.(.(((............))).).))))))..................))))))))..((((((....)))))).(((((.((((..(.(((((((((..(((........))).)))))))).).)..)))).))))))))))....))))..))))))).))).))))))))))).

Structure

a     u   U   U   UU       AC    uaac     ugguaaauugacccuuaaaaguuuucagaguaaaaguaguauaaguuagugugaggaauaaaaaggucaaauaaagagggucagaagaaaaaauauuuucua     c    ga u -        ag   ccg 
 gagug agg AGG AUU  AAGGAGC  GUUu    uuuag                                                                                                      gggca cauu  c c uagggggu  gag   c
 ||||| ||| ||| |||  |||||||  ||||    |||||                                                                                                      ||||| ||||  | | ||||||||  |||    
 uucac ucu ucc uaa  uucuucg  caaa    aaauc                                                                                                      ucugu guag  g g auccuuca  uuc   a
a     -   -   u   -u       au    uuaa     ------------------------------------------------------------------------------------------------------     u    aa u c        -g   auc 

Annotation confidence Not enough data

Genome context

chr2: 16613641-16613887 [+]

Mature mtr-miR5744

• Accession: MIMAT0023124
• Description: Medicago truncatula mtr-miR5744 mature miRNA
• Sequence: 11 - UAGGUAUUUUAAGGAGCACGUU - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553