Stem-loop mtr-MIR5749

Accession

MI0019674

Description

Medicago truncatula mtr-MIR5749 precursor miRNA

Sequence

acccuuacgaacccgcaauagcuucUUCGGGUUGAUAAUAUUUUCUUacauggacucucauguguucguauuguccuguuugaucccugcaaugugcaccaugauuagcuugcucgcuucaagaggucgucacaaaguacagucccaacucuugcgaucuuuuugucgggccucauuuucuccauccuguaagaucucaugagauccaugugagggauauuaucaacucgaagaaguuauuugaguacgcagucaucac
.......((.((.((.(((((((((((((((((((((((((((.((((((((((.(((((((.(.((.(((........((((((..((((...))))....))))))...((((((...((((((((((....(((...(((....)))))))))))))))).).))))).................))).)).).)))))))))))))))))))))))))))))))))))))))))))))).)).))..........

Structure

---acccuua  a  c  c                           U          c       u u  g   uguccuguuugaucccugcaaugugcaccaugauuagcuu     - uuc          caca   uac   c 
          cg ac cg aauagcuucUUCGGGUUGAUAAUAUUU CUUacaugga ucucaug g uc uau                                        gcucg c   aagaggucgu    aag   agu c
          || || || ||||||||||||||||||||||||||| |||||||||| ||||||| | || |||                                        ||||| |   ||||||||||    |||   |||  
          gc ug gu uuauugaagaagcucaacuauuauagg gaguguaccu agaguac c ag aug                                        cgggc g   uuuucuagcg    uuc   uca c
cacuacugac  a  a  -                           -          -       u u  a   -----------------------uccuaccucuuuuacuc     u --u          ----   ---   a 

Annotation confidence Not enough data

Genome context

chr3: 18828630-18828888 [+]

Mature mtr-miR5749

• Accession: MIMAT0023129
• Description: Medicago truncatula mtr-miR5749 mature miRNA
• Sequence: 26 - UUCGGGUUGAUAAUAUUUUCUU - 47
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553