Stem-loop mtr-MIR171g

Accession

MI0019677

Description

Medicago truncatula mtr-MIR171g precursor miRNA

Literature search

8 open access papers mention mtr-MIR171g
(53 sentences)

Sequence

46804 reads, 848.0 reads per million, 111 experiments

gcuucagcugcaaaaguauacauggCGUGAUAUUGAUCCGGCUCAUCuauaucuucaaguucaaucauccauauucauaucaauuucagaCGAGCCGAAUCAAUAUCACUCuuguuugcuucauugcauauuaauu
........((((((((((.(((.((.(((((((((((.((((((.(((.......................................))).)))))).))))))))))))).))).)))))..)))))........

Structure

gcuucagc     --     u   u  C           C      A   auaucuucaaguucaauc 
        ugcaa  aagua aca gg GUGAUAUUGAU CGGCUC UCu                  a
        |||||  ||||| ||| || ||||||||||| |||||| |||                  u
        acguu  uucgu ugu CU CACUAUAACUA GCCGAG aga                  c
uuaauuau     ac     u   u  -           A      C   cuuuaacuauacuuauac 

Annotation confidence High

Genome context

Unknown

Mature mtr-miR171g-5p

• Accession: MIMAT0055246
• Description: Medicago truncatula mtr-miR171g-5p mature miRNA
• Sequence: 26 - CGUGAUAUUGAUCCGGCUCAUC - 47
• Evidence: experimental ; unknown

Mature mtr-miR171g-3p

• Accession: MIMAT0023132
• Description: Medicago truncatula mtr-miR171g-3p mature miRNA
• Sequence: 91 - CGAGCCGAAUCAAUAUCACUC - 111
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553