Stem-loop mtr-MIR5758

Accession

MI0019689

Description

Medicago truncatula mtr-MIR5758 precursor miRNA

Sequence

aagguggauuuaguuuucaccacuaaauacauuacuccaacuuacaccaauaaaauaacccuuuguagcaacuuacacuguagucaucaugagauccaguccguuagaauaaauuuaaauauauaaaugacuuauauugaaguggugUAAGUUGGAAGAAUGUAUUUGauaguccaaacuaaacuuuacacuu
((((((((((((((((..((...((((((((((..((((((((((((((....((((.......((((....))))((((..(((.......))).))))..((((.....................))))...))))....))))))))))))))..))))))))))...))..)))))))).))))).)))

Structure

   -     -        uc  cac          ac              auaa    ---------------acccuuuguagcaacuuac    ua   au 
aag gugga uuuaguuu  ac   uaaauacauu  uccaacuuacacca    aaua                                  acug  guc  c
||| ||||| ||||||||  ||   ||||||||||  ||||||||||||||    ||||                                  ||||  |||  a
uuc cauuu aaaucaaa  ug   GUUUAUGUAA  AGGUUGAAUguggu    uuau                                  ugac  uag  u
   a     c        cc  aua          GA              gaag    auucaguaaauauauaaauuuaaauaagauugcc    -c   ag 

Annotation confidence Not enough data

Genome context

chr6: 22625525-22625717 [+]

Mature mtr-miR5758

• Accession: MIMAT0023144
• Description: Medicago truncatula mtr-miR5758 mature miRNA
• Sequence: 148 - UAAGUUGGAAGAAUGUAUUUG - 168
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553