Stem-loop mtr-MIR5741d

Accession

MI0019692

Description

Medicago truncatula mtr-MIR5741d precursor miRNA

Sequence

uaauccgaauaaaccaucaauuuagucucuaaauuacacaaauauauaaaacccgucaauuuagucucucaauuguaugauaauccgucaauuuagucuaacaucuagauagcaaagacuaaauugacggauuuuauauaauucagggacuguuuauuauauauacuuguuuaguuuagggacuuaauugaauacgugauuuuUAGGGACUAAAUUGAUGGUUUauucuuuuua
......(((((((((((((((((((((((((((...(((..((((((((............((((((((.((((((((((.((((((((((((((((((................)))))))))))))))))))))))))))).))))))))....))))))))...(((((((((.((...)).))))))))).)))...)))))))))))))))))))))))))))......

Structure

uaaucc                           uua   -----------------------------aa        aacccgucaauu        c          u                  aacaucu 
      gaauaaaccaucaauuuagucucuaaa   cac                               auauauaa            uagucucu aauuguauga aauccgucaauuuagucu       a
      |||||||||||||||||||||||||||   |||                               ||||||||            |||||||| |||||||||| ||||||||||||||||||        
      cuuaUUUGGUAGUUAAAUCAGGGAUuu   gug                               uauauauu            gucaggga uuaauauauu uuaggcaguuaaaucaga       g
auuuuu                           uua   cauaaguuaauucagggauuugauuuguuca        --------auuu        c          -                  aacgaua 

Annotation confidence Not enough data

Genome context

chr7: 30592843-30593076 [+]

Mature mtr-miR5741d

• Accession: MIMAT0023147
• Description: Medicago truncatula mtr-miR5741d mature miRNA
• Sequence: 204 - UAGGGACUAAAUUGAUGGUUU - 224
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553