miRBase entry: mtr-MIR5037c

Stem-loop mtr-MIR5037c


Accession
MI0019698
Description
Medicago truncatula mtr-MIR5037c precursor miRNA


Sequence


aaguuaaaaggaguaagcauucaguAACCCUCAAAGGCUUCCACGGcaccaaguuacauguaaaugugaagucguggaaguguuuuuggguuuccgaaggcuuuaauccuaugcauccu
........((((..((((.(((.(.(((((..(((.(((((((((((......((((((....)))))).))))))))))).)))..))))).).))).))))...)))).........

Structure
-aaguuaaa    -gu    a   a u     UC   G           accaag      g 
         agga   aagc uuc g AACCC  AAA GCUUCCACGGc      uuacau u
         ||||   |||| ||| | |||||  ||| |||||||||||      ||||||  
         uccu   uucg aag c uuggg  uuu ugaaggugcug      agugua a
uccuacgua    aau    g   c u     uu   g           -----a      a 


Annotation confidence Low
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Genome context
chr7: 23961112-23961230 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from mtr-MIR5037c
Name Accession Chromosome Start End Strand Confidence




Database links


References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553