Stem-loop mtr-MIR2593d

Accession

MI0019699

Description

Medicago truncatula mtr-MIR2593d precursor miRNA

Sequence

6978 reads, 67.0 reads per million, 111 experiments

uuuugacuuuuagauucauucaaucgauGAUGUAUGUGGUUCAUAUUAUagagcacAUACAUCAUUGAUUGAAUGAACCUaaaaaucaaa
.(((((.((((((.((((((((((((((((((((((((.(((........))))))))))))))))))))))))))).)))))).)))))

Structure

u     c      a                        G   AUA 
 uuuga uuuuag uucauucaaucgauGAUGUAUGUG UUC   U
 ||||| |||||| |||||||||||||||||||||||| |||    
 aaacu aaaaUC AAGUAAGUUAGUUACUACAUAcac gag   U
-     a      C                        -   aUA 

Annotation confidence Low

Genome context

chr8: 8822043-8822132 [-]

Mature mtr-miR2593d-5p

• Accession: MIMAT0055263
• Description: Medicago truncatula mtr-miR2593d-5p mature miRNA
• Sequence: 29 - GAUGUAUGUGGUUCAUAUUAU - 49
• Evidence: experimental ; unknown

Mature mtr-miR2593d-3p

• Accession: MIMAT0023154
• Description: Medicago truncatula mtr-miR2593d-3p mature miRNA
• Sequence: 57 - AUACAUCAUUGAUUGAAUGAACCU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553