miRBase entry: gma-MIR5761a

Stem-loop gma-MIR5761a


Accession
MI0019702
Description
Glycine max gma-MIR5761a precursor miRNA

Literature search
1 open access papers mention gma-MIR5761a
(1 sentences)

Sequence

204263 reads, 1000.0 reads per million, 177 experiments
gauuggaagcaugagcuucaaaaccaagagguuguuuagagauugccuucacaacaaauuuucuauUGCAUUCUUGAUAUGUAGACccuccucugaugcauuuguaaugaugauccaaacuugguuguuggaaccucaaaacauuauguucuauuugaguuucccUUUUGUGUCGUGAAGCUUUUGauauccaaga
..(((((.(((.((((((((..(((((((((((((..((.......))..)))))...........(((((.......)))))((((.......(((.((((......))))))).......))))...((((.(((((((((...)))....)))))).)))))))))).))..)))))))).)).).)))))..

Structure
ga     a -  u        aa  -      ---------------------------------------------guuguuuagagauugccuucacaacaaauuuucuau     UC 
  uugga g ca gagcuuca  ac caagag                                                                                 UGCAU  U
  ||||| | || ||||||||  || ||||||                                                                                 |||||  U
  aaccu u GU UUCGAAGU  UG GUUUUc                                                                                 AUGUA  G
ag     a a  U        GC  U      ccuuugaguuuaucuuguauuacaaaacuccaagguuguugguucaaaccuaguaguaauguuuacguagucuccuccCAG     UA 


Annotation confidence Low
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Genome context
chr10: 51252115-51252310 [-]

Database links

Mature gma-miR5761a-5p

Accession MIMAT0054279
Description Glycine max gma-miR5761a-5p mature miRNA
Sequence 67 - UGCAUUCUUGAUAUGUAGAC - 86
Evidence experimental
unknown

Mature gma-miR5761a-3p

Accession MIMAT0023157
Description Glycine max gma-miR5761a-3p mature miRNA
Sequence 166 - UUUUGUGUCGUGAAGCUUUUG - 186
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553